Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_L12
(406 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 204 2e-53
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 204 2e-53
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 203 3e-53
At1g53180.1 68414.m06027 expressed protein 31 0.39
At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to... 29 1.2
At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to... 29 1.2
At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to... 29 1.2
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 2.1
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 2.1
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 28 2.1
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 2.7
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 27 4.8
At3g15115.1 68416.m01912 expressed protein 27 4.8
At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative ... 27 6.3
At1g19510.1 68414.m02430 myb family transcription factor contain... 27 6.3
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha... 26 8.3
At4g30110.1 68417.m04281 ATPase E1-E2 type family protein / halo... 26 8.3
At4g21120.1 68417.m03054 amino acid permease family protein simi... 26 8.3
At3g59190.1 68416.m06599 F-box family protein contains F-box dom... 26 8.3
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ... 26 8.3
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 204 bits (497), Expect = 2e-53
Identities = 90/118 (76%), Positives = 102/118 (86%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 201 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRIIKLWSCAGADRLQTGMRGA 374
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RI K+ SCAGADRLQTGMRGA
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGA 118
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 204 bits (497), Expect = 2e-53
Identities = 90/118 (76%), Positives = 102/118 (86%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 201 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRIIKLWSCAGADRLQTGMRGA 374
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RI K+ SCAGADRLQTGMRGA
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGA 118
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 203 bits (496), Expect = 3e-53
Identities = 90/118 (76%), Positives = 102/118 (86%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 201 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRIIKLWSCAGADRLQTGMRGA 374
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RI K+ SCAGADRLQTGMRGA
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGA 118
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 30.7 bits (66), Expect = 0.39
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +3
Query: 6 FVENTMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 134
F EN RR +R RYC + PYP S P+ K+ D+GK
Sbjct: 20 FFENLFTRR-SRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60
>At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 294 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 151
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 189
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 294 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 151
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 51 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 102
>At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 294 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 151
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 180 SDEYEQLSSEALEAGRICCNKYLV 251
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 144 SLSFCPSRKYGSLGQAH 94
SLSFCPS Y S G+ H
Sbjct: 327 SLSFCPSNIYSSTGRVH 343
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 132 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 305
KK + PL + +++ EYE GR CCN ++CG + ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308
Query: 306 VIRIIKLWS 332
+ I + S
Sbjct: 309 TRQGINMTS 317
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.9 bits (59), Expect = 2.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 228 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 317
+ C K K C + F I HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 204 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRIIKLWSC 335
S+A+ G C C+ + K CG+ I+ HP H +++ C
Sbjct: 65 SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110
>At3g15115.1 68416.m01912 expressed protein
Length = 339
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 6 FVENTMGRRPARCYRYCKNKPYP 74
F +N + RR +R RYC + PYP
Sbjct: 26 FFDNLLDRR-SRILRYCHSDPYP 47
>At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 305
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 234 CNKYLVKNCGKDQFHIRMRLHPFHVIRI 317
C K K C + I+ HPFH +R+
Sbjct: 143 CQKNFHKECVQSPLEIKHPSHPFHSLRL 170
>At1g19510.1 68414.m02430 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 100
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 96 VPDPKIRIFDLGKKRATVDDFPL 164
VP PK + D+G K +DDF L
Sbjct: 69 VPLPKYKTVDVGSKSRGIDDFDL 91
>At4g36080.1 68417.m05136 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF00454: Phosphatidylinositol 3-
and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
Length = 3839
Score = 26.2 bits (55), Expect = 8.3
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 272 LIFTAVLYEVLVATDTACFQRLRTQLLVLIRH*VH 168
LI T + VLV T ACF+ LR L+ VH
Sbjct: 321 LIDTLLEERVLVGTGRACFESLRPLAYSLLAEIVH 355
>At4g30110.1 68417.m04281 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase family protein /
heavy-metal-associated domain-containing protein similar
to cadmium efflux pump protein from Geobacillus
stearothermophilus [GI:16753175], cadmium resistance
protein B from Staphylococcus aureus [GI:14020985]
Length = 951
Score = 26.2 bits (55), Expect = 8.3
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +3
Query: 201 SSEALEAGRICCNKYLVKNCGKDQFHIR 284
S E G CC Y ++C D H R
Sbjct: 911 SRERCHHGSNCCRSYAKESCSHDHHHTR 938
>At4g21120.1 68417.m03054 amino acid permease family protein similar
to cationic amino acid transporter-1 [Rattus norvegicus]
GI:1589917; contains Pfam profile PF00324: Amino acid
permease
Length = 594
Score = 26.2 bits (55), Expect = 8.3
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 150 DDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQF-HIRMRLHPFHVIRII 320
+DF + VH + ++Y L A+ I C +V G +F +I +H ++ +I
Sbjct: 187 EDFRIIVHKLGEDYSHLDPIAVGVCAIICVLAVVGTKGSSRFNYIASIIHMVVILFVI 244
>At3g59190.1 68416.m06599 F-box family protein contains F-box domain
Pfam:PF00646
Length = 388
Score = 26.2 bits (55), Expect = 8.3
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +3
Query: 135 KRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNK 242
K A DF + V V Y LSSEALE CC K
Sbjct: 297 KGANAADFMMGVCNVKTMY--LSSEALEVLTFCCKK 330
>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 681
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 192 EQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 317
E +S + A C NK+ K C + I+ HPFH +R+
Sbjct: 130 ESKTSRSYYACLECGNKFH-KQCVESPLEIKHPSHPFHSLRL 170
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,058,699
Number of Sequences: 28952
Number of extensions: 209955
Number of successful extensions: 630
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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