Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L11
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         27   1.3  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   4.0  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   5.3  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    25   5.3  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    24   7.0  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    24   7.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    24   7.0  
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce...    24   9.3  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    24   9.3  

>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 256 KLNSQEVYQAGNNCYRLHLSSEQS 327
           K N Q V   G+N  ++H SSE+S
Sbjct: 477 KENEQTVQSVGDNAKKIHASSEES 500


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +1

Query: 187 TYAVYFWPPNQ-RQREDCEVINFKKLNSQEVYQAGNNCYRLHLSSEQSIVMGTYKNSTGK 363
           TY  Y   P+  R    C+ +N    N   V  A  NC  ++      + + T  N   K
Sbjct: 2   TYVTYLHKPSSIRNAVFCKFVNASSWN---VIVAKVNCLEVYSYENNRLCLITSANIFAK 58

Query: 364 IVNL 375
           IVN+
Sbjct: 59  IVNV 62


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 151 DEIYDLNGLLGTTYAVYFWPPNQRQREDCEVINFKK 258
           DE   LN +L  +   YF   +++ R  C +++FK+
Sbjct: 618 DENQSLNNILVASLKFYFNLLHRKVRNGCALLHFKE 653


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 109 IRNNEELCLDYYKNDEIYDLNGLLGTTYAVYFWPPNQRQREDCEVINFK 255
           +    E  +D   +DE Y LN     T A + +P NQR     +  + K
Sbjct: 119 VNEEYENSIDEESDDEGYSLNEDTTATNASFRYPMNQRSTRKSQFYSSK 167


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 238 EVINFKKLNSQEVYQAGNNCYRLHLSSEQSIVMGTYKNSTGKIVNL 375
           E+I+FK++NS+       + + L + S++      Y +S   IV L
Sbjct: 101 EMIDFKQINSEFFLSHRQHGFVLFIDSKKKPRQSFYTDSATSIVQL 146


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 4   IENTQISQIVSFAKMSCKMCVQLLALVYLFCNVNCIRNN 120
           ++NT  +Q +    +  ++C+   ALV L+ N +C R++
Sbjct: 516 LKNTSYNQKLHTLLIIQRICLNPRALVELYINYDCDRSS 554


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 55  KMCVQLLALVYLFCNVNCIRNNEE 126
           +MC +   L+ L+ N +CI  N E
Sbjct: 519 RMCEEPQTLIELYLNYDCISGNTE 542


>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 223 QREDCEVINFKKLNSQEVYQAGNNCYRLHLSSEQSI 330
           Q++D    +  KL S    +  NN ++L LSSE+ +
Sbjct: 218 QQKDFWSHHLSKLESTANTETANNIHKLLLSSEKDV 253


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 190 YAVYFWPPNQRQREDC-EVIN-FKKLNSQEVYQAGNNCYRLHLSSEQSIV 333
           YA  F P  +   E C E++  +K+L   +   AG N YR+ +   +S++
Sbjct: 658 YARTFKP--KLNTESCAEIVKKYKQLRMDDAQGAGKNSYRITVRQLESMI 705


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,966
Number of Sequences: 5004
Number of extensions: 28426
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)