Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L11
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0357 - 22339691-22339773,22340087-22340371,22340407-22340524     29   1.2  
02_04_0356 - 22331622-22331704,22331799-22332083,22332186-22332306     29   1.6  
07_01_0695 + 5251802-5253016                                           27   5.0  
03_02_0406 + 8182870-8184262,8184376-8184452,8184809-8184920,818...    27   5.0  
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549...    26   8.7  
06_03_0577 + 22461831-22462023,22462378-22463160,22463380-224649...    26   8.7  

>02_04_0357 - 22339691-22339773,22340087-22340371,22340407-22340524
          Length = 161

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 1   CIENTQISQIVSFAKMSCKMCVQLLALVYLFCNVNCI 111
           CI   QI++IV     SC     L ALV+L    +CI
Sbjct: 48  CITFGQIAEIVDRGSSSCGTSGSLYALVFLVTGCSCI 84


>02_04_0356 - 22331622-22331704,22331799-22332083,22332186-22332306
          Length = 162

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 1   CIENTQISQIVSFAKMSCKMCVQLLALVYLFCNVNCI 111
           CI   QI++I+     SC     L ALV L    NC+
Sbjct: 49  CITFGQIAEIIDRGSSSCGTSGALYALVMLLTGCNCV 85


>07_01_0695 + 5251802-5253016
          Length = 404

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = +1

Query: 163 DLNGLLGTTYAVYFWPPNQRQREDCEVINFKKLNSQEVYQAGNNCYRLHLSSEQSIV 333
           DLNG L   +AVY  P +     D E   + K  S +     NN Y L L  ++ IV
Sbjct: 302 DLNGSLVMVHAVYGSPMDLWFLSDLEQGLWVKKYSIDFEYYNNNAYPLLLLDDEKIV 358


>03_02_0406 +
           8182870-8184262,8184376-8184452,8184809-8184920,
           8185064-8185071,8185633-8186217
          Length = 724

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 220 RQREDCEVINFKKLNSQEVYQAGNNCYRLHLSSEQSIVMGT 342
           R R D  +I+ + + S+E +    +C  LH+  +Q   +GT
Sbjct: 90  RSRRDNSIISRRIVCSKEGFHETRDCENLHVDQKQQARVGT 130


>07_03_0635 + 20151861-20152249,20152589-20152709,20154914-20154996,
            20155819-20155903,20155987-20156277,20156555-20156645,
            20157380-20158280,20158401-20158561,20158759-20158862,
            20159040-20159205,20159283-20159378,20159694-20159800,
            20160443-20160775,20161393-20161599,20161774-20161857,
            20162887-20163020,20163166-20163393,20163541-20163712,
            20164301-20164555,20164647-20164919
          Length = 1426

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 151  DEIYDLNGLLGTTYAVYFW 207
            + + DLN LLG TYA  F+
Sbjct: 1195 ESVNDLNNLLGATYAAVFF 1213


>06_03_0577 +
           22461831-22462023,22462378-22463160,22463380-22464936,
           22465082-22465449
          Length = 966

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 292 NCYRLH-LSSEQSIVMGTYKNSTGKIVNLL 378
           N Y LH L   ++++ GT  +S GK++NL+
Sbjct: 218 NIYGLHSLRLTENMLTGTIPSSLGKLINLV 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,251,515
Number of Sequences: 37544
Number of extensions: 156800
Number of successful extensions: 361
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)