Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_L11
(380 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 34 0.034
SB_27263| Best HMM Match : Kelch_1 (HMM E-Value=2.10055e-42) 30 0.55
SB_56019| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_12293| Best HMM Match : OATP (HMM E-Value=0) 28 2.2
SB_58896| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 28 2.9
SB_52520| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 27 6.8
SB_24078| Best HMM Match : cNMP_binding (HMM E-Value=1.4e-26) 27 6.8
SB_15220| Best HMM Match : VAR1 (HMM E-Value=3) 27 6.8
SB_11532| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-08) 26 9.0
>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 346
Score = 34.3 bits (75), Expect = 0.034
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 34 SFAKMSCKMCVQLLALVYLFCNVNCIRNNEELCLDYYKNDEIY--DLNGLLGTTYAVYFW 207
S A+++ + LL Y + + N I N+ + C +YY Y D++ LL T+YA ++
Sbjct: 220 SIAQLASLVSRYLLNKPY-YVDRNRIFNSIKRCYEYYHGYASYSQDVHMLLATSYASNWF 278
Query: 208 PPNQRQREDC 237
NQR DC
Sbjct: 279 TENQRNNFDC 288
>SB_27263| Best HMM Match : Kelch_1 (HMM E-Value=2.10055e-42)
Length = 559
Score = 30.3 bits (65), Expect = 0.55
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 94 KINKLKRVTVRTFCKTFLRMTRFAKFVCFQ 5
K KL R ++ CK FL +++ A+F+C +
Sbjct: 169 KSGKLDRASMEYICKNFLHLSKNAEFLCLE 198
>SB_56019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 130 IAPRYYEYNLRCKINKLKRVTVRTFCKTFLRMTRFAK 20
IA R Y + L N K +T FC TFL R A+
Sbjct: 95 IAGRPYSFTLDYVTNGSKNITFSDFCPTFLLKKRIAQ 131
>SB_12293| Best HMM Match : OATP (HMM E-Value=0)
Length = 1446
Score = 28.3 bits (60), Expect = 2.2
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = +1
Query: 1 CIENTQISQIVSFAKMSCKMCVQLLALVYLFCNVNCIRNNEE 126
C+E ++++S+ ++C + Q+++ + FC+ CI+ E+
Sbjct: 1046 CLEYN--NELLSYLLIACGLFFQVVSTLLYFCSYYCIKRRED 1085
>SB_58896| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 352
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 94 CNVNCIRNNEELCLDYYKNDEIYDLNGLLGTTY 192
CNV C + + L ++Y+K + DLN T Y
Sbjct: 86 CNVKCDEDEKCLSVNYWKLENKCDLNNATKTMY 118
>SB_52520| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 344
Score = 26.6 bits (56), Expect = 6.8
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +1
Query: 94 CNVNCIRNNEELCLDYYKNDEIYDLNGLLGTTYAVYFWPPNQRQREDCEVINFKKLNSQE 273
CN+ C + + L ++Y+K + DLN T A+Y P +++ N ++ +
Sbjct: 52 CNLKCDEDEKCLSVNYWKGERKCDLN---NATKAMY--PEREKKDRTAIYANIRE-GERS 105
Query: 274 VYQAGN 291
+ AGN
Sbjct: 106 IAVAGN 111
>SB_24078| Best HMM Match : cNMP_binding (HMM E-Value=1.4e-26)
Length = 692
Score = 26.6 bits (56), Expect = 6.8
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -2
Query: 205 KNKRHT---LFPGVRLSRKFHHFYNNPNIAPRYYEYNLRCKINKLKR 74
K KR T L P ++ K HHFY+ N P YN + K N KR
Sbjct: 454 KEKRCTIKALTPCQIITLKKHHFYDILNQYPNEKVYNEKWKENLSKR 500
>SB_15220| Best HMM Match : VAR1 (HMM E-Value=3)
Length = 310
Score = 26.6 bits (56), Expect = 6.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 1 CIENTQISQIVSFAKMSCKMCVQLLALVYLFCNVNCIRNNEELCLD 138
C++NT ++ K + +CV V N N +NNE LC+D
Sbjct: 128 CVDNTTRVSNQNYEKNNEALCVDNTTRV---SNQNYEKNNEALCVD 170
Score = 26.6 bits (56), Expect = 6.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 1 CIENTQISQIVSFAKMSCKMCVQLLALVYLFCNVNCIRNNEELCLD 138
C++NT ++ K + +CV V N N +NNE LC+D
Sbjct: 148 CVDNTTRVSNQNYEKNNEALCVDNTTRV---SNQNYEKNNEALCVD 190
Score = 26.6 bits (56), Expect = 6.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 1 CIENTQISQIVSFAKMSCKMCVQLLALVYLFCNVNCIRNNEELCLD 138
C++NT ++ K + +CV V N N +NNE LC+D
Sbjct: 168 CVDNTTRVSNQNYEKNNEALCVDNTTRV---SNQNYEKNNEALCVD 210
Score = 26.2 bits (55), Expect = 9.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 1 CIENTQISQIVSFAKMSCKMCVQLLALVYLFCNVNCIRNNEELCLD 138
C++NT ++ K + +CV V N N +NNE LC+D
Sbjct: 68 CVDNTTRVTNQNYEKNNEALCVDNTTRV---SNQNYEKNNEALCVD 110
>SB_11532| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-08)
Length = 326
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 181 GTTYAVYFWPPNQRQREDCEVINFKKLNSQEVYQAGNN 294
G +Y W Q +R V+ KKLN + GNN
Sbjct: 271 GINPLLYAWRVQQFRRAFIRVLGLKKLNCWSKNRVGNN 308
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,580,265
Number of Sequences: 59808
Number of extensions: 204799
Number of successful extensions: 619
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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