Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L11
         (380 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24090.1 68417.m03459 expressed protein                             26   7.4  
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol...    26   9.7  
At5g13210.1 68418.m01516 expressed protein                             26   9.7  
At2g24150.1 68415.m02885 expressed protein contains Pfam profile...    26   9.7  
At1g10980.1 68414.m01260 expressed protein  ; expression support...    26   9.7  

>At4g24090.1 68417.m03459 expressed protein 
          Length = 308

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = +1

Query: 205 WPPNQRQREDCEVINFKKLNSQEVYQAGNNCYRLHLSSEQSIVM----GTYKNSTGKIV 369
           W PN     +  ++N K+L +          +R+  SSE ++ +    G  KNS   IV
Sbjct: 11  WKPNSVTLPEINLLNPKQLTASSSQYRRTRNWRIRSSSEDNVAISSDGGDLKNSLSGIV 69


>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
           oligopeptidase family protein low similarity to
           SP|Q99797 Mitochondrial intermediate peptidase,
           mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
           contains Pfam profile PF01432: Peptidase family M3
          Length = 860

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 217 DSVAKNKRHT-LFPGVRLSRKFHHFYN 140
           +++A +  H  +FPG R+ R  HH  N
Sbjct: 186 ENIADDPGHVDIFPGSRIPRHLHHLLN 212


>At5g13210.1 68418.m01516 expressed protein
          Length = 673

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +1

Query: 181 GTTYAVYFWPPNQRQREDCEVINFKKLNSQEVYQAGNNCYRLHLSSEQSIVMGTYK 348
           G   A Y +    R R+D  V   K L   EVY    N   L  +   S+ M +YK
Sbjct: 331 GVVEAHYAYRVRDRLRKDVLVPLRKTLQLPEVYMGARNWDILPYNRVASVAMKSYK 386


>At2g24150.1 68415.m02885 expressed protein contains Pfam profile
           PF03006: Uncharacterised protein family (Hly-III /
           UPF0073)
          Length = 344

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 305 YICHPSNRLLWVHTRIVLGKLSI 373
           + CHP+ RLL++ +  +LG L+I
Sbjct: 203 FSCHPNFRLLYLSSISILGLLAI 225


>At1g10980.1 68414.m01260 expressed protein  ; expression supported
           by MPSS
          Length = 516

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 8/31 (25%), Positives = 20/31 (64%)
 Frame = +2

Query: 92  FAT*IVFVITRSYVWIIIKMMKFTT*TDSWE 184
           FAT +V ++  S+ WI +++  +++ +  W+
Sbjct: 400 FATVLVIMVVLSFAWIYVEVYLYSSLSQFWK 430


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,893,376
Number of Sequences: 28952
Number of extensions: 140417
Number of successful extensions: 325
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)