Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L10
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)                   60   2e-09
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)         39   0.003
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.032
SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)                   32   0.30 
SB_37977| Best HMM Match : PP2C (HMM E-Value=8.6e-08)                  30   1.2  
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)                   29   3.7  
SB_37164| Best HMM Match : Prion_octapep (HMM E-Value=9.2)             28   6.4  
SB_47365| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 611

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 29/87 (33%), Positives = 44/87 (50%)
 Frame = +1

Query: 271 ECTKAIFKGGSLSNAYRGVWAPLGGIAAINAMVFGAYGNTRRAMPNPDSLXXXXXXXXXX 450
           +C K I K  S+   Y+G+ +PL G+  INA++FG  G T R + N              
Sbjct: 196 DCFKQIIKRESVLGLYKGMASPLAGLGLINAIIFGVQGETLRRL-NGSGTMAQAISGAIA 254

Query: 451 XXLQSFACAPVELVKTRQQLAKPSERM 531
             +QS  C P+EL KTR Q+    +++
Sbjct: 255 GGVQSIVCCPMELAKTRVQVQGQGQKL 281


>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
          Length = 247

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
 Frame = +1

Query: 220 PLDTLKVHIQSGRGS-PLECTKAIFKGGSLSNAYRGVWAPLGGIAAINAMVFGAYGNTRR 396
           PLDT+KV +Q+  G+ PL+      K   +   Y+G+ AP+   A + A+ F +    +R
Sbjct: 89  PLDTIKVRLQASFGAGPLDMLARTVKTEGVRGLYKGMLAPVLVAAPVTAVSFYSLSIGKR 148

Query: 397 AM---PNPD-SLXXXXXXXXXXXXLQSFACAPVELVKTRQQLAKPS 522
                PN + ++              SF  AP E VK   Q+ K S
Sbjct: 149 LQLSDPNKEPTMVQYYNAGVFCGVCVSFIYAPTERVKCLLQVQKES 194


>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 35.5 bits (78), Expect = 0.032
 Identities = 32/127 (25%), Positives = 43/127 (33%), Gaps = 11/127 (8%)
 Frame = +1

Query: 160 MAMDFXXXXXXXXXXXXXXHPLDTLKVHIQ---SGRGSPLECTKAIFKGGSLSNAYRGVW 330
           MA DF               P DT+KV +Q   S   + L+C    FK       Y G  
Sbjct: 9   MATDFTAGAMGGTACVFAGQPFDTIKVKMQTFPSMSKNALDCGIKTFKQEGFKGLYAGTI 68

Query: 331 APLGGIAAINAMVFGAYGN--------TRRAMPNPDSLXXXXXXXXXXXXLQSFACAPVE 486
             L    A N+ +F  YG         T +   +  ++              SF   P E
Sbjct: 69  PSLAANIAENSFLFLFYGQCLSLIKTLTGKKHESELTIFHNACAGSGAAFFMSFVLCPAE 128

Query: 487 LVKTRQQ 507
           L+K R Q
Sbjct: 129 LIKCRLQ 135


>SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 313

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
 Frame = +1

Query: 217 HPLDTLKVHIQS-GRGSP---------LECTKAIFKGGSLSNAYRGVWAPLGGIAAINAM 366
           HPLDT+KV +Q+  R  P          +C     +       Y+G+ AP+ G+  I A+
Sbjct: 45  HPLDTIKVRLQTMPRPKPGEKPMFTGTFDCAMKTIRNEGFFGLYKGMAAPITGVTPIFAI 104

Query: 367 VFGAYGNTRRAM---PNPD 414
            F  +   ++     PN D
Sbjct: 105 CFWGFNMGKKLQMKDPNAD 123


>SB_37977| Best HMM Match : PP2C (HMM E-Value=8.6e-08)
          Length = 662

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 226 DTLKVHIQSGRGSPLECTKAI 288
           ++L VH+  GRG  L CTKA+
Sbjct: 262 NSLDVHVSEGRGDRLSCTKAV 282


>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
 Frame = +1

Query: 265 PLECTKAIFKGGSLSNAYRGVWAPLGGIAAINAMVFGAYGNTRRAMPNPD-SLXXXXXXX 441
           P++C K   KG  +   YRG+ + L G     ++ F  +   +  M + +  L       
Sbjct: 82  PIDCVKKTVKGHGVLGLYRGLSSLLYGSVPKASVRFAVFEYLKNKMADENGKLTQFQTLA 141

Query: 442 XXXXXLQSFA---CAPVELVKTR--QQLAKPSERMPSGAWAGARYILKTGG 579
                  S A     P+E +K +      +P+ +   G ++G R ILKT G
Sbjct: 142 SGLGAGVSEAVVVVCPMETIKVKFIHDQTQPNPKY-KGFFSGVRTILKTEG 191


>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
          Length = 905

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 411 GLADDSRNRWSSCRGTT 461
           G+ +DSRNRWS C   T
Sbjct: 635 GVDEDSRNRWSGCSAVT 651


>SB_37164| Best HMM Match : Prion_octapep (HMM E-Value=9.2)
          Length = 207

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 327 MGTFRRYSGNKRYG-VWSLWEYSSSNA*PGLADDSRNRWSS 446
           MGT   Y   + +G  W L E S +    GL   +RN W+S
Sbjct: 1   MGTSETYRRKQEHGDKWDLQEESGTWGQVGLTGGNRNMWTS 41


>SB_47365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 648

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 354 NKRYGVWSLWEYSSSNA*PGLADDSRNRWSSCRGTT 461
           NK+Y +     Y   ++ PG      N+WSSCR  T
Sbjct: 139 NKKYYMRCTTSYCYRDSCPGDTVFKSNKWSSCRSMT 174


>SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = -3

Query: 561 VPGA--SPCAGRHTFTRFCELLTSFNQLDRCTRKAL*CPCNCSSGCVSRQRVRVRHCSTS 388
           +PG    PCAGR+  T  CE L    Q    T   L    +C   C    R R R C+  
Sbjct: 256 IPGVMGKPCAGRNVNTEKCE-LKPCPQDGGFTEWGL--FGDCDKSCGGGARTRKRECTNP 312

Query: 387 IP 382
            P
Sbjct: 313 AP 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,513,677
Number of Sequences: 59808
Number of extensions: 411589
Number of successful extensions: 1020
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)