Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_L07
(480 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0) 131 3e-31
SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_38678| Best HMM Match : C2 (HMM E-Value=3.1e-29) 29 2.0
SB_9766| Best HMM Match : DUF291 (HMM E-Value=4.3) 29 2.6
SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023) 28 3.5
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_18932| Best HMM Match : Flagellin_C (HMM E-Value=1.9) 28 3.5
SB_6380| Best HMM Match : MFS_1 (HMM E-Value=0.88) 27 6.1
SB_7893| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08) 27 6.1
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14) 27 8.0
SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13) 27 8.0
>SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)
Length = 115
Score = 131 bits (317), Expect = 3e-31
Identities = 62/104 (59%), Positives = 75/104 (72%)
Frame = +2
Query: 116 RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGGP 295
RLY K + G+KRGLRNQH NT+L+KIEG +R + FY GKR +VYRAK +T G
Sbjct: 6 RLYTKGIVLGFKRGLRNQHPNTSLVKIEGVDERKNTEFYLGKRLAFVYRAKNKTVAKGDK 65
Query: 296 RGKKTKLRAIWGKVTRPHGNSGGVRARFKSNLPAQAMGHRIRVM 427
K TKLR IWGKVTR HGNSG VRA+F+ NLP +AMG +RV+
Sbjct: 66 --KATKLRVIWGKVTRAHGNSGVVRAKFRHNLPPKAMGATVRVI 107
>SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 30.7 bits (66), Expect = 0.65
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -1
Query: 441 LEGYSIT---RILCPMACAGRLDLNLARTPPELPCGRVTLPQIARSLVFLPRGPPGI 280
+E Y++T RI P+ + NL PP + C R+ LP+ ++ +P P I
Sbjct: 82 IEPYNLTTTRRITIPLLPKVKSSKNLNEMPPRIQCMRIRLPRFEYTISHVPVQKPEI 138
>SB_38678| Best HMM Match : C2 (HMM E-Value=3.1e-29)
Length = 375
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 293 DPRGSASFSLHGRHTRNACQHRKVHHCDPLYLQSLTKLYFHV 168
DP S GR+ R+ H + C+P++ ++LT FH+
Sbjct: 274 DPYADVSICHAGRYLRHKQSHTLLQECNPIFNETLT---FHI 312
>SB_9766| Best HMM Match : DUF291 (HMM E-Value=4.3)
Length = 604
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = -1
Query: 351 PCGRVTLPQIARSLVFLPRGPPGIGVLFFAR*TYTQRLPA*KSASLRSFVPSIFNKA 181
P VTL Q R GP G + AR T R+ + + LRS+VPS +A
Sbjct: 34 PYRHVTLHQTVRGYPGSVPGPRGEVTAYPARVTRDGRVTSLQGKDLRSYVPSWMRRA 90
>SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023)
Length = 354
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 218 DALFYAGKRCVYVYRAKKRTPIPGGPRGKKTKLR 319
D+ F+AG + K P+ GGPR + +LR
Sbjct: 168 DSTFWAGPETISRRMLKGEVPVQGGPRKEAKRLR 201
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -2
Query: 362 HRSCHAGGSPCPRLHEA*FSCHVDPRGSASFSLHGRHTRNACQHRKVHHCDPLYLQSLTK 183
H S CPR+ F+C V P S F+ R+AC H V C P+ + T
Sbjct: 1251 HLSVRVCSPVCPRVFTCLFAC-VYPSVSRVFTC-----RSACVHLSVRVCSPVCPRVFTC 1304
Query: 182 LY 177
L+
Sbjct: 1305 LF 1306
>SB_18932| Best HMM Match : Flagellin_C (HMM E-Value=1.9)
Length = 247
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -3
Query: 463 LNRKILDPGRIQHNTYPMSHGLRWQVRLEPGTDTTGVAMRAGHLAPDCTKLSFLATWTPG 284
L+R +LD Q +++ + W V G D + + + L P + L W PG
Sbjct: 37 LHRLLLDTDNNQIDSWETINPTSWAVNTSTGIDKGNLVINSHFLEPSRSYFLRLNAWKPG 96
>SB_6380| Best HMM Match : MFS_1 (HMM E-Value=0.88)
Length = 715
Score = 27.5 bits (58), Expect = 6.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 70 FCGSCRGCFSGFLFW 26
FCG GC FLFW
Sbjct: 533 FCGGAFGCLQTFLFW 547
>SB_7893| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)
Length = 391
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 250 HATLASIEKCITAILCTFNL*QSCIFMLVAQTTFV 146
H L I +C TA L NL +C+ M V +FV
Sbjct: 68 HVKLRIIRQCYTASLALGNLLMACVVMPVRIISFV 102
>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
Length = 506
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 260 RAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSG-GVRARFKS 385
R ++R P P PR + WG T GN+G R R K+
Sbjct: 79 RRRRRRPPPCPPRNCAVSAWSSWGPCTHQCGNAGTQTRTRTKT 121
>SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 393 GRLDLNLARTPPELPCGRVTLPQI 322
G DLN+ +T P + C R+ P++
Sbjct: 257 GLFDLNIGQTIPSVTCRRIPFPEL 280
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -2
Query: 302 CHVDPRGSASFSLHGRHTRNACQHRKVHHCDPLY 201
CH+ P G ++F L G +++ C+ K + + Y
Sbjct: 2779 CHMCPAGLSTFGLQGATSKDQCRECKDYEPEDKY 2812
>SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13)
Length = 340
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -2
Query: 302 CHVDPRGSASFSLHGRHTRNACQHRKVHHCDPLY 201
CH+ P G ++F L G +++ C+ K + + Y
Sbjct: 80 CHMCPAGLSTFGLQGATSKDQCRECKDYEPEDKY 113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,688,288
Number of Sequences: 59808
Number of extensions: 393331
Number of successful extensions: 986
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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