Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L07
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...   147   3e-36
U39674-7|AAA80417.1|   91|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AF039046-8|AAB94212.1|   72|Caenorhabditis elegans Caenacin (cae...    29   1.7  
AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein.     28   3.1  
AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated...    28   3.1  
AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated...    28   3.1  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    28   3.1  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    28   3.1  
U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose 6-pho...    27   5.3  
U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose 6-pho...    27   5.3  
AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative treh...    27   5.3  
AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans trehalose-6-p...    27   5.3  
Z81062-6|CAB02949.2|  320|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AL033508-1|CAA22058.2|  821|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z81486-13|CAE47465.1|  611|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z81486-12|CAC42272.1|  585|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical pr...    27   9.3  
S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.       27   9.3  
AY221631-1|AAP97492.1|  611|Caenorhabditis elegans muscarinic ac...    27   9.3  
AL034391-3|CAE47471.1|  611|Caenorhabditis elegans Hypothetical ...    27   9.3  
AL034391-2|CAA22301.2|  585|Caenorhabditis elegans Hypothetical ...    27   9.3  
AF139093-1|AAD48771.1|  585|Caenorhabditis elegans muscarinic ac...    27   9.3  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score =  147 bits (357), Expect = 3e-36
 Identities = 70/121 (57%), Positives = 88/121 (72%)
 Frame = +2

Query: 83  VRKVSSKPRHGRLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYR 262
           V +  S P  GRLY KA+FTG+KRGLR Q E+T+LLK+EG  ++ DA FYAGKR VY+Y+
Sbjct: 6   VARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYK 65

Query: 263 AKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGGVRARFKSNLPAQAMGHRIRVMLYPSR 442
           A  +T   G      T+ RAIWGK+TRPHGN+G VRA+F  N+P  A+G RIRV+LYPS 
Sbjct: 66  AHNKTLKTG--HTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSN 123

Query: 443 I 445
           I
Sbjct: 124 I 124


>U39674-7|AAA80417.1|   91|Caenorhabditis elegans Hypothetical
           protein C06E2.2 protein.
          Length = 91

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 197 QSLTKLYFHVGCADHVCNL 141
           ++LTKL+FH+ CAD++  +
Sbjct: 49  ETLTKLFFHLACADNIIKI 67


>AF039046-8|AAB94212.1|   72|Caenorhabditis elegans Caenacin
           (caenorhabditis bacteriocin)protein 2 protein.
          Length = 72

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 187 QSCIFMLVAQTTFVTCEYSFGVEPAMTGFRGHFTHHLGWF 68
           +S + +LVA   F T +Y +G  P M G  G +   +G +
Sbjct: 3   RSILILLVALIAFSTAQYGYGGYPGMMGGYGGYPGMMGGY 42


>AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein.
          Length = 1338

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 300  ARKLSFVQSGAR*PARMATPVVSVPGSSLTCQRRPWDIGYVLCCILPG 443
            A+K+S          + A+P   +P + +T Q   W +G V  C+L G
Sbjct: 1273 AQKVSGAVKPVDFDTKWASPEFHIPETPVTVQSDMWGMGVVTFCLLAG 1320


>AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated
            protein 89, isoform c protein.
          Length = 1393

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 300  ARKLSFVQSGAR*PARMATPVVSVPGSSLTCQRRPWDIGYVLCCILPG 443
            A+K+S          + A+P   +P + +T Q   W +G V  C+L G
Sbjct: 1237 AQKVSGAVKPVDFDTKWASPEFHIPETPVTVQSDMWGMGVVTFCLLAG 1284


>AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated
            protein 89, isoform d protein.
          Length = 1396

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 300  ARKLSFVQSGAR*PARMATPVVSVPGSSLTCQRRPWDIGYVLCCILPG 443
            A+K+S          + A+P   +P + +T Q   W +G V  C+L G
Sbjct: 1240 AQKVSGAVKPVDFDTKWASPEFHIPETPVTVQSDMWGMGVVTFCLLAG 1287


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
            protein 89, isoform f protein.
          Length = 7441

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 300  ARKLSFVQSGAR*PARMATPVVSVPGSSLTCQRRPWDIGYVLCCILPG 443
            A+K+S          + A+P   +P + +T Q   W +G V  C+L G
Sbjct: 7285 AQKVSGAVKPVDFDTKWASPEFHIPETPVTVQSDMWGMGVVTFCLLAG 7332


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 300  ARKLSFVQSGAR*PARMATPVVSVPGSSLTCQRRPWDIGYVLCCILPG 443
            A+K+S          + A+P   +P + +T Q   W +G V  C+L G
Sbjct: 7925 AQKVSGAVKPVDFDTKWASPEFHIPETPVTVQSDMWGMGVVTFCLLAG 7972


>U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose
           6-phosphate synthaseprotein 1, isoform b protein.
          Length = 1294

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 319 TKLSFLATWTPGDRRPFLCTVDIHATLASIEK 224
           TKLS  A    G+ + F  T DIH  L+ +EK
Sbjct: 893 TKLSLEADEESGEEKGFEITYDIHDELSEMEK 924


>U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose
            6-phosphate synthaseprotein 1, isoform a protein.
          Length = 1331

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 319  TKLSFLATWTPGDRRPFLCTVDIHATLASIEK 224
            TKLS  A    G+ + F  T DIH  L+ +EK
Sbjct: 930  TKLSLEADEESGEEKGFEITYDIHDELSEMEK 961


>AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative trehalose
            6-phosphatesynthase protein.
          Length = 1331

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 319  TKLSFLATWTPGDRRPFLCTVDIHATLASIEK 224
            TKLS  A    G+ + F  T DIH  L+ +EK
Sbjct: 930  TKLSLEADEESGEEKGFEITYDIHDELSEMEK 961


>AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans
            trehalose-6-phosphate synthase protein.
          Length = 1331

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 319  TKLSFLATWTPGDRRPFLCTVDIHATLASIEK 224
            TKLS  A    G+ + F  T DIH  L+ +EK
Sbjct: 930  TKLSLEADEESGEEKGFEITYDIHDELSEMEK 961


>Z81062-6|CAB02949.2|  320|Caenorhabditis elegans Hypothetical
           protein F15A4.7 protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 247 ATLASIEKCITAILCTFNL*QSCIFMLVA--QTTFVTC 140
           A L+   + I   LC  ++  SC F+LVA  Q TF TC
Sbjct: 222 ACLSDRVRSIERSLCFTSISISCTFLLVAGTQLTFATC 259


>AL033508-1|CAA22058.2|  821|Caenorhabditis elegans Hypothetical
           protein Y106G6G.2 protein.
          Length = 821

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 224 VHHCDPLYLQSLTKLYFHVGCADHVCN 144
           + H D   L+ L K   H GC  HV N
Sbjct: 569 ISHPDTYTLEDLKKTVLHSGCVVHVAN 595


>Z81486-13|CAE47465.1|  611|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1b protein.
          Length = 611

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 342 ARMATPVVSVPGSSLTCQRRPWDIGYVLC 428
           A +A  V+S+P  +     + WD+GY +C
Sbjct: 110 ADIAIGVISIPMFTYYTAIQKWDLGYTMC 138


>Z81486-12|CAC42272.1|  585|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1a protein.
          Length = 585

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 342 ARMATPVVSVPGSSLTCQRRPWDIGYVLC 428
           A +A  V+S+P  +     + WD+GY +C
Sbjct: 110 ADIAIGVISIPMFTYYTAIQKWDLGYTMC 138


>Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical
           protein R53.3a protein.
          Length = 543

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 308 FSCHVDPRGSASFSLHGRHTRNACQHRKVH 219
           F CH+ P+    FS       N C+HR+VH
Sbjct: 187 FRCHLCPKSYTQFS-------NLCRHRRVH 209


>S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.
          Length = 581

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 308 FSCHVDPRGSASFSLHGRHTRNACQHRKVH 219
           F CH+ P+    FS       N C+HR+VH
Sbjct: 187 FRCHLCPKSYTQFS-------NLCRHRRVH 209


>AY221631-1|AAP97492.1|  611|Caenorhabditis elegans muscarinic
           acetylcholine receptorlarge isoform protein.
          Length = 611

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 342 ARMATPVVSVPGSSLTCQRRPWDIGYVLC 428
           A +A  V+S+P  +     + WD+GY +C
Sbjct: 110 ADIAIGVISIPMFTYYTAIQKWDLGYTMC 138


>AL034391-3|CAE47471.1|  611|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1b protein.
          Length = 611

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 342 ARMATPVVSVPGSSLTCQRRPWDIGYVLC 428
           A +A  V+S+P  +     + WD+GY +C
Sbjct: 110 ADIAIGVISIPMFTYYTAIQKWDLGYTMC 138


>AL034391-2|CAA22301.2|  585|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1a protein.
          Length = 585

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 342 ARMATPVVSVPGSSLTCQRRPWDIGYVLC 428
           A +A  V+S+P  +     + WD+GY +C
Sbjct: 110 ADIAIGVISIPMFTYYTAIQKWDLGYTMC 138


>AF139093-1|AAD48771.1|  585|Caenorhabditis elegans muscarinic
           acetylcholine receptor protein.
          Length = 585

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 342 ARMATPVVSVPGSSLTCQRRPWDIGYVLC 428
           A +A  V+S+P  +     + WD+GY +C
Sbjct: 110 ADIAIGVISIPMFTYYTAIQKWDLGYTMC 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,831,205
Number of Sequences: 27780
Number of extensions: 276923
Number of successful extensions: 622
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)