Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L06
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    31   0.14 
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   3.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   4.1  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    25   5.4  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   7.1  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    25   9.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.4  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   9.4  

>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 209 LSFSQSNSHGFSYVLPSDPQTGL*IFPQIHNGGGRAVT 96
           L++ Q++++G SYVL +DP      F +  NG  R  T
Sbjct: 289 LAYEQADANGISYVLATDPDADRFAFAEKINGAWRRFT 326


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -2

Query: 283 IPRYSSRGCPPRMRCFSRLSYCCVSCLFR-SQIHTGSRTSYHLTRRRDYRFFRKYITAVA 107
           +P Y    C P    F RL +     L++ SQI  G R+ YH +    Y ++    +   
Sbjct: 631 VPEYDISACLPG---FYRLCWKDKGILYQDSQIQIGVRSEYHNSEGAIYLYYENRQSNTL 687

Query: 106 ELLPSILAQRRSEEYRVYSF 47
           + L S L +  S  +   +F
Sbjct: 688 KSLSSTLIRTFSTFHLATTF 707


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 17/85 (20%)
 Frame = +1

Query: 148 VCGSDGKTYENPCEFDCEKDKTHSNMTIVK----NTACEVGIPCYCTLEYAPVCGSNGK- 312
           +C  DG+  E+ C+ +C K + +              C+  IPC   LE +  CG   K 
Sbjct: 716 LCHPDGEC-ESSCKKECGKRRMYCEHVCQSPCHAGHPCDERIPCKAPLEVSCECGRIRKK 774

Query: 313 -----TYAN-------KCSLECTQK 351
                +Y N        C+LEC+Q+
Sbjct: 775 VTCDASYDNPDPQHKVSCTLECSQQ 799


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +2

Query: 242 PHARWASPATVPWNMPPSVALTEKLTPTNVHWNAP 346
           P  R      V W MP  + +       N+HW AP
Sbjct: 364 PEQRLPLMMAVGWLMPAGIFVFAWTNSPNIHWIAP 398


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
 Frame = +3

Query: 225 DNREKHRMRGGHPLLLY-------LGICP 290
           DNR+   +R G P++LY       +G+CP
Sbjct: 697 DNRQVFMVRNGEPMILYPEESAYEMGLCP 725


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 413 KLASLAPWHSPSCSIFRDGIIF 348
           KL    PW    C IF D I++
Sbjct: 214 KLQGFPPWQLRLCEIFHDPILY 235


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +1

Query: 157  SDGKTYENPCEFDCEKDKTHSNMTIVKNTACEVGIPCYCTLEY 285
            SD   Y N  E    KD   SN+  V  T+   G P  C L +
Sbjct: 2850 SDPGNYSNNIENPYTKDFEDSNLAYVLYTSGSTGKPKGCCLTH 2892


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 210 DTQQYDNREKHRMRGGHPLL 269
           D   Y NR   +MRG  PLL
Sbjct: 94  DNPYYKNRPPQKMRGNKPLL 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,686
Number of Sequences: 5004
Number of extensions: 51273
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)