Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L06
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0379 + 43177978-43178572,43178643-43178674                       34   0.083
01_06_1092 + 34469732-34470118                                         33   0.14 
01_01_0010 - 62670-62783,62877-63020,63339-63431,63665-63779,639...    31   0.44 
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566...    29   3.1  
08_01_1007 - 10201181-10201298,10202180-10202484,10202577-102027...    28   5.4  
04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979     28   5.4  
12_01_0415 + 3292576-3293727                                           27   7.2  
09_01_0053 + 873918-874411,875255-875492,875682-875702                 27   9.5  
05_03_0328 - 12468142-12468262,12468443-12468641,12468758-124689...    27   9.5  

>01_07_0379 + 43177978-43178572,43178643-43178674
          Length = 208

 Score = 33.9 bits (74), Expect = 0.083
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 229 LSYCCVSCLFRSQIH-TGSRTSYHLTRRRDYRFFRKYITA 113
           L Y C  C FR+    T S+T +HL  R +YR++  Y+ A
Sbjct: 157 LFYSCACCAFRNTATATSSKTIFHLHPRWEYRWYLLYLCA 196


>01_06_1092 + 34469732-34470118
          Length = 128

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +1

Query: 394 GAKLASLHPCICTREKDPVCGSDGVTY 474
           G   A L P  C R  DPVCG+DGVTY
Sbjct: 49  GGSEAQLCPVRCFRP-DPVCGADGVTY 74


>01_01_0010 -
           62670-62783,62877-63020,63339-63431,63665-63779,
           63902-64152,64248-64431,64694-64950
          Length = 385

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -1

Query: 464 PSLPQTGSFSRVHIHGCKLASLAPWHSPSCSIFRDGIIFWVHSSEHLLA*VFPL 303
           PS      FS V I+ C L  L   +S S    +DG++F+ +   H LA + PL
Sbjct: 190 PSTYHRYRFSAVPIYECTLQGLQAAYSGSTPYVKDGLLFY-NKHAHYLAGITPL 242


>03_05_0936 -
           28955486-28955683,28956320-28956424,28956550-28956693,
           28957078-28957356,28957480-28957587,28958288-28958567,
           28958724-28960029,28961301-28962342
          Length = 1153

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 166 YHLTRRRDYRFFRKYITAVAELLPSIL 86
           YHL R  DY ++R+++  V ELL + L
Sbjct: 864 YHLLRLYDYFYYREHLLIVCELLKANL 890


>08_01_1007 -
           10201181-10201298,10202180-10202484,10202577-10202726,
           10202954-10202956
          Length = 191

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = +1

Query: 316 YANKCS--LECTQKIIPSL----KMEHDGECQGAKLASL 414
           + NKC   +EC QK  P L    K+  DG CQGA L  L
Sbjct: 125 FENKCKELIEC-QKASPQLLLTAKVTQDGSCQGAILDQL 162


>04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979
          Length = 158

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -2

Query: 307 R*SHRRGHIPRYSSRGCPPRMRCFSRLSYCCVSCLFRSQIHTGSRTSYHLTRRRD 143
           R S RR  +   S+    P +  + RL  CC++    S +  G     H  +RRD
Sbjct: 43  RESRRRCALGGASAASESPPLHLYQRLPKCCITSHRCSTLRAGYPADLHGQKRRD 97


>12_01_0415 + 3292576-3293727
          Length = 383

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 116 GGGRAVTEYISAAAIRRIPSLFILC 42
           GGG    E +S A IRR+   FILC
Sbjct: 38  GGGGGGEEILSVAWIRRLLEAFILC 62


>09_01_0053 + 873918-874411,875255-875492,875682-875702
          Length = 250

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 245 HARWASPATVPWNMPPSVALTEKLTPT 325
           HA+W+  ATV +   P + + E+L  T
Sbjct: 192 HAKWSPAATVTFMYEPEIRINEELMET 218


>05_03_0328 -
           12468142-12468262,12468443-12468641,12468758-12468974,
           12469896-12469994,12470843-12470899,12470943-12472577
          Length = 775

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
 Frame = +2

Query: 146 PSAGQMVRRTRTRVNL---TAKKTRHTAI*QS*KTPHARWASPATVPWNMPPSVALTEKL 316
           PS G + +R  T V L   T  K +  A  Q       R A     P   PP   +T+ +
Sbjct: 25  PSLGFLTKRD-TEVKLPRATRVKNKTPASVQITAEQILREARERQEPEIRPPKQKITDSI 83

Query: 317 TPTNVHWNAPKR---LYRL*RWNMMANARELNWRVYIRVYARARKI 445
             +       K    + R  RWN+ A  +   W    R +ARAR +
Sbjct: 84  ELSEYRLRRRKEFEDVIRRVRWNVNAWVKYAKWEEQQRDFARARSV 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,690,592
Number of Sequences: 37544
Number of extensions: 360252
Number of successful extensions: 975
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)