Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_L06
(533 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54030.1 68418.m06720 DC1 domain-containing protein contains ... 33 0.12
At5g60920.1 68418.m07642 phytochelatin synthetase, putative / CO... 31 0.64
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f... 31 0.64
At3g17750.1 68416.m02265 protein kinase family protein contains ... 30 1.1
At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc... 30 1.1
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 29 1.9
At5g55960.1 68418.m06979 expressed protein 29 2.6
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f... 29 2.6
At3g32904.1 68416.m04164 hypothetical protein 29 2.6
At1g73460.1 68414.m08504 protein kinase family protein contains ... 29 2.6
At1g73450.1 68414.m08503 protein kinase, putative similar to nuc... 29 2.6
At5g56050.1 68418.m06993 hypothetical protein 28 4.5
At5g42620.1 68418.m05188 expressed protein 27 7.9
At1g63830.2 68414.m07224 proline-rich family protein contains pr... 27 7.9
At1g63830.1 68414.m07223 proline-rich family protein contains pr... 27 7.9
>At5g54030.1 68418.m06720 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 419
Score = 33.1 bits (72), Expect = 0.12
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +1
Query: 133 KIYSPVCGSDGKTYENPCEFDCEKDKTHSNMTIVKNTACEVGIPCYCTLEYAPVCGSNGK 312
K+Y+ + S G+ YEN C F C+ + + T C + + C P+ S K
Sbjct: 83 KVYTHIFTSSGRIYENTCHF-CQ---SKLEFLFARCTICNLNVDIECLFALPPLTISEPK 138
Query: 313 TYANKCSL 336
+ + SL
Sbjct: 139 HHKHSLSL 146
>At5g60920.1 68418.m07642 phytochelatin synthetase, putative / COBRA
cell expansion protein COB, putative similar to
phytochelatin synthetase GI:29570314; similar to
GB:AAK56072; identified in Roudier, et al, Plant Phys.
(2002) 130:538-548 (PMID:12376623); identical to cDNA
putative phytochelatin synthetase GI:3559804; contains
Pfam profile PF04833: Phytochelatin synthetase-like
conserved region
Length = 456
Score = 30.7 bits (66), Expect = 0.64
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 239 TPH-ARWASPATVPWN-MPPSVALTEKLTPTNVHWNAPKRLYRL*RWNMMANARELNWRV 412
TPH A SP T +PP V T + P VHW+ K+ Y+ W + N+R+
Sbjct: 270 TPHLASVVSPPTKKGTVLPPLVQCTRHMCPIRVHWHV-KQNYKE-YWRVKITITNFNYRL 327
>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 144
Score = 30.7 bits (66), Expect = 0.64
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 355 IPSLKMEHD---GE-CQGAKLASLHPCICTREKDPVCGSDGVTY 474
+PS K+ + GE C+G + P C R DPVCG D VTY
Sbjct: 47 LPSEKINGEKNRGEFCEGIAKPASCPVQCFRP-DPVCGEDSVTY 89
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 145 PVCGSDGKTYENPCEFDCEKDKTHSNMTIVKNTACEVG 258
PVCG D TY C D + +VK AC+VG
Sbjct: 80 PVCGEDSVTYWCGC-----ADALCHGVRVVKQGACDVG 112
>At3g17750.1 68416.m02265 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 1138
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 166 YHLTRRRDYRFFRKYITAVAELLPSIL 86
YHL R DY +FR+++ V ELL + L
Sbjct: 887 YHLLRLYDYFYFREHLLIVCELLKANL 913
>At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin
2b protein [Arabidopsis thaliana] GI:509423; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain; identical to cDNA
cyc2a mRNA for cyclin 2a protein GI:728518
Length = 429
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 91 YSVTALPPPLCICGKIYSPVCGSDG-KTYENPCEFDC 198
Y + PP L +Y+ C DG + + + CEF C
Sbjct: 336 YEMLRFPPSLLAATSVYTAQCTLDGSRKWNSTCEFHC 372
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 29.1 bits (62), Expect = 1.9
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 10/119 (8%)
Frame = +1
Query: 118 LCICGKIYSPVCGSDGKTYENPCEFDCEKDKT----HSNMTIVKNTACE-----VGIPCY 270
LC CGK P + + C CE+ + H + + C V C+
Sbjct: 165 LCYCGKEEDPPADNPW-ILPHSCGEVCERPLSNNCGHCCLLLCHPGPCASCPKLVKAKCF 223
Query: 271 CT-LEYAPVCGSNGKTYANKCSLECTQKIIPSLKMEHDGECQGAKLASLHPCICTREKD 444
C +E CG + + C I ++ HDGEC + +++ C C + K+
Sbjct: 224 CGGVEDVRRCGHKQFSCGDVCERVLDCNIHNCREICHDGECPPCRERAVYKCSCGKVKE 282
>At5g55960.1 68418.m06979 expressed protein
Length = 648
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 340 IPVNICWRKFFR-*SHRRGHIPRYSSRGCPPR 248
IP N+ W++ FR S R+ P SS PPR
Sbjct: 14 IPTNLAWQEMFRSASSRKPQDPPSSSSSSPPR 45
>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 117
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 442 DPVCGSDGVTY 474
DPVCG+DGVTY
Sbjct: 52 DPVCGTDGVTY 62
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 145 PVCGSDGKTYENPCEFDCEKDKTHSNMTIVKNTACEVG 258
PVCG+DG TY C D +VK AC+ G
Sbjct: 53 PVCGTDGVTYWCGC-----PDAACHGARVVKKGACDTG 85
>At3g32904.1 68416.m04164 hypothetical protein
Length = 330
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 251 RWASPATVP-WNMPPSVALTEKLTPTNVHWNAPKRLYRL*RWNMMANARELN 403
+W +P T P WN P +V + PT W P + +W+ A +L+
Sbjct: 276 QWGTPPTAPQWNSPSNVPQWT-IPPTTPQWGTPSSMP---QWSSSPTAPQLS 323
>At1g73460.1 68414.m08504 protein kinase family protein contains
protein kinase domain Pfam:PF00069
Length = 1169
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 166 YHLTRRRDYRFFRKYITAVAELLPSIL 86
YHL R DY ++R+++ V ELL + L
Sbjct: 918 YHLLRLYDYFYYREHLLIVCELLKANL 944
>At1g73450.1 68414.m08503 protein kinase, putative similar to
nuclear serine/threonine protein kinase GI:3582644 from
[Rattus norvegicus]
Length = 1152
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 166 YHLTRRRDYRFFRKYITAVAELLPSIL 86
YHL R DY ++R+++ V ELL + L
Sbjct: 901 YHLLRLYDYFYYREHLLIVCELLKANL 927
>At5g56050.1 68418.m06993 hypothetical protein
Length = 283
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +2
Query: 236 KTPHARWASPATVPWNMPP-SVALTEKLTP 322
+TP ++W SP PW P S T TP
Sbjct: 21 ETPSSKWYSPIYTPWRTTPRSTQSTPTTTP 50
>At5g42620.1 68418.m05188 expressed protein
Length = 841
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 292 VCGSNGKTYANKC--SLECTQKIIPSLKMEHDGECQGA 399
VC S ++Y C SL+C+ + + S E D EC G+
Sbjct: 786 VCHSACQSYNMACGASLDCSDQTLFSTAEEGDAECTGS 823
>At1g63830.2 68414.m07224 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains 1 predicted transmembrane domain
Length = 232
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -2
Query: 223 YCCVSCLFRSQIHTGSRTSYHLTRRRDYRFFRKYITAVAELLP 95
YCC+SCL G SY L RR Y +Y T A +P
Sbjct: 35 YCCISCL------CGPCVSYMLRRRALYNDMSRY-TCCAGYMP 70
>At1g63830.1 68414.m07223 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains 1 predicted transmembrane domain
Length = 232
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -2
Query: 223 YCCVSCLFRSQIHTGSRTSYHLTRRRDYRFFRKYITAVAELLP 95
YCC+SCL G SY L RR Y +Y T A +P
Sbjct: 35 YCCISCL------CGPCVSYMLRRRALYNDMSRY-TCCAGYMP 70
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,202,269
Number of Sequences: 28952
Number of extensions: 277062
Number of successful extensions: 743
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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