Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L04
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual    27   2.8  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    26   4.8  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    25   6.4  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   8.5  

>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +1

Query: 226 TDVVKSFVNMVKVGVLPRGEVFTLNVDRQMKEVVTMFHMLYYAKDFSTFIKTGCWMR--- 396
           T VV+ FVN  +  +    EV    + +Q      + + +   +DF+T +     M+   
Sbjct: 219 TRVVEVFVNNYQFSIDGNKEVLLAEIPKQYIVTGNLLYRVLELEDFATQMDASIVMKNEL 278

Query: 397 LYLNEGMFVYSLSV 438
           + LNE M  Y  S+
Sbjct: 279 IALNEHMLTYLPSI 292


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 487 YEIYPYYFVRADVIQKAYLIKMRKGLLDL 573
           Y+ YPY   RADV++   L K     LDL
Sbjct: 113 YDSYPYNIERADVVRYFILYKYGGIYLDL 141


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 324 SHYVPYAILCKGLLNFHQDRLLDAPLP*RRNVCI 425
           SH +   IL    LN+H + ++D  LP     CI
Sbjct: 526 SHRIVSNILMTYFLNYHPEDIIDVGLPLHTLFCI 559


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 517  HERSSKDKFRRGEEELHLCSLRGI 446
            H R    KFR   +ELH  SL  I
Sbjct: 1326 HRRREAQKFRNQHKELHFSSLEQI 1349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,400
Number of Sequences: 5004
Number of extensions: 47674
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)