Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L04
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0791 + 23189778-23190173,23190336-23190554                       29   2.2  
07_01_1114 + 10294271-10294379,10296537-10296958,10297101-10297319     29   2.2  
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636...    29   2.8  
08_02_1346 + 26293846-26294511                                         27   8.7  
02_02_0734 + 13500808-13500932,13501194-13501273,13501499-135015...    27   8.7  

>12_02_0791 + 23189778-23190173,23190336-23190554
          Length = 204

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 178 LGMNFKIEDNMELYTKTDV-VKSFVNMVKVGVLPRGEVFTLNVDRQMKEVV 327
           L  + K+ D+ +LY + +V +KSF +  ++ V+P+  V  L  DR+   V+
Sbjct: 115 LSASSKVADDGKLYYEVEVNIKSFASNNELAVMPQDRVQRLEWDRRYLSVL 165


>07_01_1114 + 10294271-10294379,10296537-10296958,10297101-10297319
          Length = 249

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 178 LGMNFKIEDNMELYTKTDV-VKSFVNMVKVGVLPRGEVFTLNVDRQMKEVV 327
           L  + K+ D+ +LY + +V +KSF +  ++ V+P+  V  L  DR+   V+
Sbjct: 160 LSASSKVADDGKLYYEVEVNIKSFASNNELAVMPQDRVQRLEWDRRYLSVL 210


>12_01_1092 -
           11362094-11362367,11362739-11362795,11363256-11363683,
           11364350-11365462
          Length = 623

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/89 (24%), Positives = 30/89 (33%)
 Frame = -2

Query: 320 SFIWRSTLRVKTSPLGKTPTFTIFTKXXXXXXXXXXXXXXXXLKFMPSSVISLYITGSVT 141
           SF+W    R+   PL        F K                  F  S  I        +
Sbjct: 51  SFVWAVLKRIVPKPL----LGNSFGKRSLRTNIWKFIKLRRFETFQLSDCIGDLKVSHYS 106

Query: 140 WLSNFKMNSCFCLMSIDTKLTSSFSGRAE 54
           WLSN + ++CFC   I  +  SS S   +
Sbjct: 107 WLSNIEFSNCFCSAIIGKQTGSSTSAEEQ 135


>08_02_1346 + 26293846-26294511
          Length = 221

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 276 QRRSFHS*C*PPNEGGSHYVPYAILCK-GLL-NFHQD 380
           QR  F     PPN   +  VPYAILCK G + NF QD
Sbjct: 93  QRAFFQPPPPPPNSAAA--VPYAILCKWGYMGNFLQD 127


>02_02_0734 +
           13500808-13500932,13501194-13501273,13501499-13501537,
           13502195-13502532
          Length = 193

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 487 YEIYPYYFVRADVIQKAYLIKMRKGLLDLKLSE 585
           +E+Y +  +    I+K +L   R G+LD+KL +
Sbjct: 105 FEVYDFALIIGHSIEKLFLDVPRTGVLDIKLDK 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,307,060
Number of Sequences: 37544
Number of extensions: 301762
Number of successful extensions: 650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)