Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L04
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8818| Best HMM Match : I-set (HMM E-Value=0)                        29   2.9  
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)                     28   5.0  
SB_16307| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2787

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +1

Query: 142  VTEPVMYKDITELGMNFKIEDNME-LYTKTDVVKSFVNMVKVGVLPRGEVFTLNVDRQMK 318
            +T P++YKD  ++ ++FKI+   + +       K+  +  +V +  RG+ + L + +  K
Sbjct: 2720 ITAPMVYKDGQDIKVSFKIKSRPKPIIAWYKDGKALTSSKRVTLTSRGDTYELIIKKATK 2779

Query: 319  EVV 327
            E V
Sbjct: 2780 EDV 2782


>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
          Length = 231

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 422 YTPSLSLSDTAKTAKV*FFLPPTKFILTTSFVPMSFKKPT 541
           YTP+ S + T        + P T +  TTS+ P     PT
Sbjct: 80  YTPTTSYTPTPSYTSTTSYTPTTSYTSTTSYTPTPSYTPT 119



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +2

Query: 359 TSQLSSRPAAGCAFTLTKECLYTPSLSLSDTAKTAKV*FFLPPTKFILTTSFVPMSFKKP 538
           T+  +S P+     + T    YTP+ S + T        + P   +  TTS+ P +   P
Sbjct: 11  TTSYTSTPSYTPTTSYTPTPSYTPTTSYTCTTSYTPTPSYTPTPSYTPTTSYTPTTSYTP 70

Query: 539 T 541
           T
Sbjct: 71  T 71


>SB_16307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 340 MLYYAKDFSTFIKTGCWMRLYLNEGMFVYSLSVAVRYREDCKGV 471
           +L    D+ T+I+ GCW+ L    G+ +Y+L     YR   +G+
Sbjct: 63  LLIVKLDYMTYIRFGCWLAL----GLLIYAL---YGYRHSIEGL 99


>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = +2

Query: 359 TSQLSSRPAAGCAFTLTKECLYTPSLSLSDTAKTAKV*FFLPPTKFILTTSFVP 520
           T   +  P+  C  + T    YTP+ S + T        +   T +  TTS+ P
Sbjct: 95  TPSYTPTPSYTCTTSYTSTTSYTPTTSYTPTTSYTCTTSYTSTTSYTPTTSYTP 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,644,844
Number of Sequences: 59808
Number of extensions: 351111
Number of successful extensions: 786
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)