Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L04
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97405-9|AAB53012.2|  266|Caenorhabditis elegans C-term of hsp70...    31   0.63 
AF303269-1|AAG50227.1|  266|Caenorhabditis elegans Hsp70-interac...    31   0.63 
Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U97405-9|AAB53012.2|  266|Caenorhabditis elegans C-term of
           hsp70-interacting protein(chip family) protein 1
           protein.
          Length = 266

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 361 FSTFIKTGCWMRLYLNEGMFVYSLSVAVRYREDCKGVVLPPPYEIYPYYFV 513
           +S  IK     + Y N  M  + L+      EDCK  +   P E+ P YF+
Sbjct: 28  YSKAIKVNPLPKYYQNRAMCYFQLNNLKMTEEDCKRALELSPNEVKPLYFL 78


>AF303269-1|AAG50227.1|  266|Caenorhabditis elegans
           Hsp70-interacting protein protein.
          Length = 266

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 361 FSTFIKTGCWMRLYLNEGMFVYSLSVAVRYREDCKGVVLPPPYEIYPYYFV 513
           +S  IK     + Y N  M  + L+      EDCK  +   P E+ P YF+
Sbjct: 28  YSKAIKVNPLPKYYQNRAMCYFQLNNLKMTEEDCKRALELSPNEVKPLYFL 78


>Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical
           protein T01H3.4 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
 Frame = +1

Query: 166 DITELGMNFKIEDNMELYTKTDVVKSFVNMVKVGVLPR-GEVFTLNVDRQMKEVVTMF-H 339
           D T+ G NF+IED  +     ++  S +N  K     R  E+F +N +   K V + +  
Sbjct: 310 DCTKQGFNFEIEDEPQ---SQNLDFSIINDSKFSKNDRVFEIFLINDETPKKTVYSTYGQ 366

Query: 340 MLYYAKDFSTFIKTGCWMRLYLNEGMFVYSLSVAVRYREDCK-GVVLPPPYEIYPYY 507
           +LY  K   + ++   ++ LY    +F   L   ++     K   +LP P  +Y Y+
Sbjct: 367 LLYTGKRLRSAVQLS-FIPLYYIYLLFCMVLQFTMKLFGPLKFASLLPSPAFLYFYF 422


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 514 RADVIQKAYLIKMRKGLLDLKLSEFY 591
           R  +I +  +I+M  G +DLK SEF+
Sbjct: 265 RRKIIDRIQVIRMNTGKVDLKTSEFF 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,160,059
Number of Sequences: 27780
Number of extensions: 264165
Number of successful extensions: 560
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)