Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L04
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01240.1 68415.m00036 reticulon family protein (RTNLB15) cont...    28   5.4  
At5g39350.1 68418.m04766 pentatricopeptide (PPR) repeat-containi...    27   7.2  
At1g08520.1 68414.m00943 magnesium-chelatase subunit chlD, chlor...    27   7.2  
At4g15510.1 68417.m02370 photosystem II reaction center PsbP fam...    27   9.5  
At3g19870.1 68416.m02516 expressed protein                             27   9.5  

>At2g01240.1 68415.m00036 reticulon family protein (RTNLB15)
           contains PFam profile PF02453: Reticulon
          Length = 160

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 313 MKEVVTMFHMLYYAKDFSTFIKTGCWMRLYLNEGMFVYSLSV 438
           M+  + M + + Y KD  TF+KT  ++ +  N G ++  L++
Sbjct: 65  MEGHLLMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTI 106


>At5g39350.1 68418.m04766 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 677

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +1

Query: 292 TLNVDRQMKEVVTMFHMLYYAKDFSTFIKTGCWMRLYLNEGMFVYSLSVAVRYREDCKGV 471
           TL+V   +   +T    L+     S+ +     +R+Y+ EG++  ++SV +R   +  GV
Sbjct: 54  TLSVTYALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSE--GV 111

Query: 472 VLPPPYEIYPY 504
              P    YP+
Sbjct: 112 KCVPDGYTYPF 122


>At1g08520.1 68414.m00943 magnesium-chelatase subunit chlD,
           chloroplast, putative / Mg-protoporphyrin IX chelatase,
           putative (CHLD) similar to Mg-chelatase SP|O24133 from
           Nicotiana tabacum, GB:AF014399 GI:2318116 from [Pisum
           sativum]
          Length = 760

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +1

Query: 166 DITELGMNFKIEDNMELYTKTDVVKSFVNMVKVGVLPRGEVFTLNVDRQMKEVVTMF 336
           D  E  ++ +IE N +   KT++VKS    + +GV     + +++V+  +K   T+F
Sbjct: 150 DEWEDDLDERIEYNADNTIKTEIVKSPFIQIPLGVTEDRLIGSVDVEESVKRGTTVF 206


>At4g15510.1 68417.m02370 photosystem II reaction center PsbP family
           protein contains PsbP domain PF01789; identical to
           SP:O23403 (Arabidopsis thaliana)
          Length = 287

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 178 LGMNFKIEDNMELYTKTDV-VKSFVNMVKVGVLPRGEVFTLNVDRQMKEVV 327
           L  + ++ D+ +LY + +V +KS+ N  ++ V+P+  V  L  +R+   V+
Sbjct: 199 LSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVL 249


>At3g19870.1 68416.m02516 expressed protein 
          Length = 1117

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 338 ICYTMQRTSQLSSRPAAGCAFTLTKECLYTPSLSLSDTAK 457
           IC T+  +   SSR   G +  L+  CLY P L + D A+
Sbjct: 585 ICRTLM-SHHKSSRLFLGLSRLLSLTCLYFPDLEVRDNAR 623


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,383,992
Number of Sequences: 28952
Number of extensions: 246675
Number of successful extensions: 582
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)