Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L03
         (424 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52517| Best HMM Match : Phage_integr_N (HMM E-Value=0.6)            31   0.52 
SB_50085| Best HMM Match : BRAP2 (HMM E-Value=3.3)                     31   0.52 
SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)                     31   0.52 
SB_55111| Best HMM Match : Phage_integrase (HMM E-Value=0.15)          31   0.52 
SB_33856| Best HMM Match : Phage_integrase (HMM E-Value=0.15)          31   0.52 
SB_29308| Best HMM Match : Phage_integrase (HMM E-Value=0.15)          31   0.52 
SB_20342| Best HMM Match : Phage_integr_N (HMM E-Value=0.6)            31   0.52 
SB_3705| Best HMM Match : Phage_integr_N (HMM E-Value=0.6)             31   0.52 
SB_55531| Best HMM Match : Phage_integrase (HMM E-Value=0.41)          30   0.69 
SB_45144| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-38)                 30   0.91 
SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.6  
SB_36628| Best HMM Match : Bac_Ubq_Cox (HMM E-Value=1.1)               28   2.8  
SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_45203| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_52517| Best HMM Match : Phage_integr_N (HMM E-Value=0.6)
          Length = 271

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 25  DFKMNKHLII-FLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNV 201
           +F ++  LI  F A+C ++ HAF++      S+GN          +I K V E  +   +
Sbjct: 142 NFSLSSFLIARFQAMCLLAFHAFLRVGEITTSSGNK-GNPPLAIYQITKMVNEQKEIVAL 200

Query: 202 KKQFNNMVDDFNK 240
           K  F N    +N+
Sbjct: 201 KLTFGNFKHSYNQ 213


>SB_50085| Best HMM Match : BRAP2 (HMM E-Value=3.3)
          Length = 228

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 25  DFKMNKHLII-FLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNV 201
           +F ++  LI  F A+C ++ HAF++      S+GN          +I K V E  +   +
Sbjct: 86  NFSLSSFLIARFQAMCLLAFHAFLRVGEITTSSGNK-GNPPLAIYQITKMVNEQKEIVAL 144

Query: 202 KKQFNNMVDDFNK 240
           K  F N    +N+
Sbjct: 145 KLTFGNFKHSYNQ 157


>SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)
          Length = 671

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 25  DFKMNKHLII-FLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNV 201
           +F ++  LI  F A+C ++ HAF++      S+GN          +I K V E  +   +
Sbjct: 535 NFSLSSFLIARFQAMCLLAFHAFLRVGEITTSSGNK-GNPPLAIYQITKMVNEQKEIVAL 593

Query: 202 KKQFNNMVDDFNK 240
           K  F N    +N+
Sbjct: 594 KLTFGNFKHSYNQ 606


>SB_55111| Best HMM Match : Phage_integrase (HMM E-Value=0.15)
          Length = 336

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 25  DFKMNKHLII-FLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNV 201
           +F ++  LI  F A+C ++ HAF++      S+GN          +I K V E  +   +
Sbjct: 153 NFSLSSFLIARFQAMCLLAFHAFLRVGEITTSSGNK-GNPPLAIYQITKMVNEQKEIVAL 211

Query: 202 KKQFNNMVDDFNK 240
           K  F N    +N+
Sbjct: 212 KLTFGNFKHSYNQ 224


>SB_33856| Best HMM Match : Phage_integrase (HMM E-Value=0.15)
          Length = 215

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 25  DFKMNKHLII-FLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNV 201
           +F ++  LI  F A+C ++ HAF++      S+GN          +I K V E  +   +
Sbjct: 32  NFSLSSFLIARFQAMCLLAFHAFLRVGEITTSSGNK-GNPPLAIYQITKMVNEQKEIVAL 90

Query: 202 KKQFNNMVDDFNK 240
           K  F N    +N+
Sbjct: 91  KLTFGNFKHSYNQ 103


>SB_29308| Best HMM Match : Phage_integrase (HMM E-Value=0.15)
          Length = 269

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 25  DFKMNKHLII-FLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNV 201
           +F ++  LI  F A+C ++ HAF++      S+GN          +I K V E  +   +
Sbjct: 86  NFSLSSFLIARFQAMCLLAFHAFLRVGEITTSSGNK-GNPPLAIYQITKMVNEQKEIVAL 144

Query: 202 KKQFNNMVDDFNK 240
           K  F N    +N+
Sbjct: 145 KLTFGNFKHSYNQ 157


>SB_20342| Best HMM Match : Phage_integr_N (HMM E-Value=0.6)
          Length = 331

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 25  DFKMNKHLII-FLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNV 201
           +F ++  LI  F A+C ++ HAF++      S+GN          +I K V E  +   +
Sbjct: 245 NFSLSSFLIARFQAMCLLAFHAFLRVGEITTSSGNK-GNPPLAIYQITKMVNEQKEIVAL 303

Query: 202 KKQFNNMVDDFNK 240
           K  F N    +N+
Sbjct: 304 KLTFGNFKHSYNQ 316


>SB_3705| Best HMM Match : Phage_integr_N (HMM E-Value=0.6)
          Length = 239

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 25  DFKMNKHLII-FLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNV 201
           +F ++  LI  F A+C ++ HAF++      S+GN          +I K V E  +   +
Sbjct: 153 NFSLSSFLIARFQAMCLLAFHAFLRVGEITTSSGNK-GNPPLAIYQITKMVNEQKEIVAL 211

Query: 202 KKQFNNMVDDFNK 240
           K  F N    +N+
Sbjct: 212 KLTFGNFKHSYNQ 224


>SB_55531| Best HMM Match : Phage_integrase (HMM E-Value=0.41)
          Length = 269

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 28  FKMNKHLII-FLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNVK 204
           F ++  LI  F A+C ++ HAF++      S+GN          +I K V E  +   +K
Sbjct: 87  FSLSSFLIARFQAMCLLAFHAFLRVGEITTSSGNK-GNPPLAIYQITKMVNEQKEIVALK 145

Query: 205 KQFNNMVDDFNK 240
             F N    +N+
Sbjct: 146 LTFGNFKHSYNQ 157


>SB_45144| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-38)
          Length = 341

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 20/95 (21%), Positives = 43/95 (45%)
 Frame = -3

Query: 305 IIIISVFFYFGASELGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTNCFSISLNA 126
           I++  +     +  L  ++ +  L+++T  L C L +S L        + T+C  +    
Sbjct: 35  IVVAILIIALNSLVLILVVRVKQLRTTTNFLLCSLAVSDLLTGLVSIPLFTSCNILQTLT 94

Query: 125 LPVLAASASRFTKA*TLIKQTARNIIKCLFILKSL 21
           + ++A +  RFT   T++   A    + + I+ SL
Sbjct: 95  ICIVAENVLRFTSISTVLHLLAITTDRYMAIMHSL 129


>SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 24/97 (24%), Positives = 45/97 (46%)
 Frame = -3

Query: 311 IGIIIISVFFYFGASELGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTNCFSISL 132
           + I+IISV     +  L  ++ +  L+ +T  L C L +S L        + T+C  +  
Sbjct: 104 LAILIISV----NSLVLILVIKVKQLRVTTNYLLCSLAVSDLLTGLVSIPLFTSCNILQT 159

Query: 131 NALPVLAASASRFTKA*TLIKQTARNIIKCLFILKSL 21
             + ++A +  RFT   T++   A    + + I+ SL
Sbjct: 160 LTICIVAENVLRFTSISTVLHLLAITTDRYMAIMHSL 196


>SB_36628| Best HMM Match : Bac_Ubq_Cox (HMM E-Value=1.1)
          Length = 461

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = -3

Query: 305 IIIISVFFYFGASELGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTNCFSISLNA 126
           I+++  F +FG   LGF     +     +++   L +  + F     L S    S S+ A
Sbjct: 128 ILLLQCFAFFGVYSLGFTPKHKVKILYVVVIGSLLLVCAMMFGNDMMLCSL-ALSFSVAA 186

Query: 125 LPVLAASASRFTKA*TLIKQTAR---NIIKCLFILKSL 21
           L ++      +    TL+ +  +   NI+  LF++ +L
Sbjct: 187 LVIMGVQKEPYAPNPTLLIRLVKLVLNIVLVLFLMFAL 224


>SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 136 EIEKQFVEIKKQVQENFKPDNVKKQFNNMVDDFNKFMSSMNPNSEAPK*KK 288
           E E+Q  +I+KQ QE  K   VK  FN+  ++ +   +  +   +  K  K
Sbjct: 148 EDERQEKKIRKQKQEKRKRKTVKADFNSSEEEVSSQKTKASSRKDQKKMNK 198


>SB_45203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 178 ENFKPDNVKKQFNNMVDDFNK 240
           +NF P  VK QF++++D ++K
Sbjct: 223 DNFLPPQVKAQFHSLLDKYDK 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,261,299
Number of Sequences: 59808
Number of extensions: 123608
Number of successful extensions: 460
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)