Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L03
         (424 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13630.1 68417.m02121 expressed protein contains Pfam profile...    29   0.98 
At5g55220.1 68418.m06883 trigger factor type chaperone family pr...    28   3.0  
At2g23430.1 68415.m02797 kip-related protein 1 (KRP1) / cyclin-d...    27   5.2  
At3g60700.1 68416.m06791 expressed protein                             26   9.1  

>At4g13630.1 68417.m02121 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 581

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 206 FLTLSGLKFSCTCFLISTNCFSISLNALPVLAASA 102
           FL L GL   C C  + + CF  SL  LPV   S+
Sbjct: 40  FLGLFGLDLPCPCDGLYSECFQESLRNLPVKKISS 74


>At5g55220.1 68418.m06883 trigger factor type chaperone family
           protein contains Pfam profiles PF05697: Bacterial
           trigger factor protein (TF), PF05698: Bacterial trigger
           factor protein (TF) C-terminus, PF00254: peptidyl-prolyl
           cis-trans isomerase, FKBP-type
          Length = 547

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +1

Query: 73  ISVHAFVKRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVD 228
           I+V    KR+    ST     E+E    E KK  QE F  + VK Q   +++
Sbjct: 478 IAVGDIFKRENLEFSTDELVKEVENSISEFKKHKQE-FDEERVKDQVQEILE 528


>At2g23430.1 68415.m02797 kip-related protein 1 (KRP1) /
           cyclin-dependent kinase inhibitor 1 (ICK1) identical to
           cyclin-dependent kinase inhibitor (ICK1) [Arabidopsis
           thaliana] GI:3550262, GI:2052502
          Length = 191

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 133 SEIEKQFVEIKKQVQENFK 189
           SEIE  FVE +KQ++E FK
Sbjct: 150 SEIEDFFVEAEKQLKEKFK 168


>At3g60700.1 68416.m06791 expressed protein
          Length = 219

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 224 TMLLNCFLTLSGLKFSCTCFLISTNCFSISLNALPVLAASASRFT 90
           + LL  ++TL  +KFSC+ FL      SI+ N +P    +   FT
Sbjct: 34  SQLLVVWVTLCAVKFSCSYFLSK----SITTNHVPYSTIAFMNFT 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,807,061
Number of Sequences: 28952
Number of extensions: 84397
Number of successful extensions: 309
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)