Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_L02
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0061 - 4812903-4812940,4813140-4813536 33 0.18
05_05_0040 + 21789322-21789734,21790429-21790459,21790730-217908... 30 1.7
03_06_0225 - 32487592-32487710,32487860-32488325,32489124-324892... 30 1.7
10_08_0081 + 14710478-14710822 29 2.2
08_02_1060 + 24007980-24008662,24010078-24010219,24010293-240115... 29 3.8
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471... 29 3.8
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295... 29 3.8
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118... 28 5.1
01_01_0868 - 6780919-6783207 28 5.1
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 28 6.7
06_01_0581 - 4153668-4153883,4154070-4155104,4155718-4156292,415... 28 6.7
01_07_0139 - 41385823-41386656 28 6.7
02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881 27 8.9
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 33.1 bits (72), Expect = 0.18
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 454 SHWLWCQWWWLEACFSSALAAVVG 383
+ W W QWWWLEA + + VG
Sbjct: 39 TRWRWRQWWWLEATRRANSSTAVG 62
>05_05_0040 +
21789322-21789734,21790429-21790459,21790730-21790815,
21791000-21791012
Length = 180
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -1
Query: 538 WKCGTDKN--ETLQRNQRAAVTASQPPKPGSHWLWCQWWWLEACFSSA 401
W+CG D + ++ + R A A + G+ W WWW E +S+A
Sbjct: 29 WRCGGDSSCVDSTDGSGRLAPLACRGGFGGADWR--PWWWREYAWSAA 74
>03_06_0225 -
32487592-32487710,32487860-32488325,32489124-32489237,
32489375-32489602,32489773-32490009,32490490-32490594
Length = 422
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 505 QRNQRAAVTASQPPKPGSHWLWCQWW 428
Q Q AA+TA QP K W W + W
Sbjct: 230 QARQHAAITAFQPDKNSWGWNWLERW 255
>10_08_0081 + 14710478-14710822
Length = 114
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 129 WRSTAPDTTSAWGSFTTTSPTLTWV 55
W S AP TT+AWG+FT W+
Sbjct: 44 WSSNAP-TTNAWGAFTAPRTVPRWL 67
>08_02_1060 +
24007980-24008662,24010078-24010219,24010293-24011537,
24012453-24013040
Length = 885
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 304 PAGSCVDADDGNHLLLDSSVPDRLRDVRRGSYDG-NYNCAAVVVRSVPDPHP 152
P GSC DAD L +D +V + R+ ++ + AA V S P P
Sbjct: 32 PGGSCPDADQLPPLKIDRAVFNESAGSRKQTFSRVRFGAAAAVAASPSSPSP 83
>08_02_0958 -
23044708-23046045,23046131-23046363,23047059-23047199,
23047296-23048334
Length = 916
Score = 28.7 bits (61), Expect = 3.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 472 QPPKPGSHWLWCQW 431
+P K G HW WC W
Sbjct: 422 KPTKYGKHWCWCFW 435
>08_02_0956 +
23026108-23027146,23027255-23027395,23029334-23029566,
23029652-23030989
Length = 916
Score = 28.7 bits (61), Expect = 3.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 472 QPPKPGSHWLWCQW 431
+P K G HW WC W
Sbjct: 422 KPTKYGKHWCWCFW 435
>06_03_0270 +
19009412-19009888,19009936-19011048,19011810-19011899,
19011928-19012027,19012135-19012333,19012559-19012679
Length = 699
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 276 SSASTQLP-AGPGRRPTEPSEWPGGRSTRGASRYNIKPTTAAKAEEKQAS 422
++ S++ P A PG S PGGRS RG S P+T+A + A+
Sbjct: 90 AARSSRTPSAAPGGTSARGSSTPGGRSGRGTSPAR-APSTSAPSTSPTAT 138
>01_01_0868 - 6780919-6783207
Length = 762
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 309 GRRPTEPSEWPGGRSTRGASR 371
G RPTEP+EW G G SR
Sbjct: 298 GFRPTEPNEWELGHFGSGCSR 318
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 297 PAGPGRRPTEPSEWPGGRSTRGAS 368
P PGRR +P PGGR + A+
Sbjct: 164 PGSPGRRLAQPPPRPGGRLAQAAA 187
>06_01_0581 -
4153668-4153883,4154070-4155104,4155718-4156292,
4158457-4158826,4159925-4160590,4161008-4161223,
4161725-4161793
Length = 1048
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +2
Query: 20 QLTNAAATIVNTTHVKVGDVVVKEPH---AEVVSGAVDLHPIKGVHKGMRV 163
+L + +I++TT V+ G V ++E A+V+ +VD+ + G+ KG+ V
Sbjct: 438 KLLDILNSILDTTKVESGKVQLEEVEFNMADVLEESVDMANVVGITKGIEV 488
>01_07_0139 - 41385823-41386656
Length = 277
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 101 EVVSGAVDLHPIKGVHKGMRVRNRAHHHRSAVIISVVTS 217
E+ G+++LHPI+ G R A+H +A + +V S
Sbjct: 61 ELWCGSIELHPIRRCINGERTVRIANHDGAAPVTRIVGS 99
>02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881
Length = 463
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 291 QLPAGPGRRPTEPSEWPGGRSTRGA 365
+LP P PS+W G R RGA
Sbjct: 7 RLPTWAAAAPPSPSDWDGRRPRRGA 31
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,027,544
Number of Sequences: 37544
Number of extensions: 237109
Number of successful extensions: 958
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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