Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L02
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35)                   33   0.14 
SB_10575| Best HMM Match : E-MAP-115 (HMM E-Value=3.2)                 31   0.97 
SB_48787| Best HMM Match : 7tm_3 (HMM E-Value=0)                       29   2.2  
SB_9399| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)                28   5.2  
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)              28   5.2  
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.1  
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)                     27   9.1  

>SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1671

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 183 WWCALF--LTLIPLCTPLIGWRSTAPDTTSAWG-SFTTTSPTLTWVVLTMV 40
           W+C  F  L ++  C+P++GW        SA+G S      T++W  L +V
Sbjct: 74  WFCTFFGALAMLDECSPVLGWVPVCCFVVSAFGISLFAQHETVSWKTLRLV 124


>SB_10575| Best HMM Match : E-MAP-115 (HMM E-Value=3.2)
          Length = 291

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 574 SIEKDNNY*LKKWKCGTDKNETLQRN--QRAAVTASQPPKPGSHW 446
           S++K+N+   +K   GTD N T Q+   QR A     PP P + W
Sbjct: 31  SLDKENSEKKEKLSKGTDDNVTPQKEKPQRGASNDLAPPPPKNPW 75


>SB_48787| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 1142

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 53  TTHVKVGDVVVKEPHAEVVSGAVDLHPIKGVHKGMRVRNRA 175
           +T++ V D ++ EP A  V     +H I+G+   ++VRN A
Sbjct: 235 STYLLVVDSILSEPLARTVIVFAQVHQIRGLLHAVQVRNAA 275


>SB_9399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 651

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 265 LLLDSSVPDRLRDVRRGSYDGNYNCAAVVVRSVPDPHPLVHPLDW 131
           L+++  +   LR +    Y G  +    V+R + + HP   PL W
Sbjct: 91  LVMEEQINSALRYLTESDYGGVLSLTDDVMRQLQEKHPNAQPLSW 135


>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
          Length = 839

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 334 SDGSVGRRPGPAGSCVDADDGNHLLLDSSVPDRL 233
           S  SVG  P P  + V A +GN  LL SS  DR+
Sbjct: 697 STTSVGPSPTPTTTDVGAIEGNECLLGSSKCDRM 730


>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
          Length = 3094

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 334 SDGSVGRRPGPAGSCVDADDGNHLLLDSSVPDRL 233
           S  SVG  P P  + V A +GN  LL SS  DR+
Sbjct: 646 STTSVGPSPTPTTTDVGAIEGNECLLGSSKCDRM 679



 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 334  SDGSVGRRPGPAGSCVDADDGNHLLLDSSVPDRL 233
            S  SVG  P P  + V A +GN  LL SS  DR+
Sbjct: 2952 STTSVGPSPTPTTTDVGAIEGNECLLGSSKCDRM 2985


>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 168  FLTLIPLCTPLIGWRSTAPDTTSAWGSFTTTSPTLT 61
            F T  P  TP +   +TAP  T+  G    T+PT T
Sbjct: 893  FPTPAPTTTPWVWPNATAPTATTPSGGGNETAPTAT 928


>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 484 LRHVDFFVVFHFYQCRTSTSLIN-SYCPFQLI 576
           L H DFFV FH  + +T+ + IN S  P+Q+I
Sbjct: 58  LAHSDFFVEFH--KSKTNNTRINRSMFPYQII 87


>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 937

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 341 RREKYKRRQPLQ--HQTNNSSQSRRKXXXXXXXXXXXXMRARLRRLAG 478
           RR+ Y RR+P+Q  H ++++S+S R              R RL +  G
Sbjct: 43  RRDNYARRRPVQDGHSSSSTSRSSRSRSSGANSEEVHIGRYRLIKTIG 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,964,413
Number of Sequences: 59808
Number of extensions: 250171
Number of successful extensions: 841
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)