Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L01
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    29   0.61 
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    27   1.9  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    27   1.9  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    26   3.2  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    26   4.3  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    25   5.7  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    25   5.7  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   9.9  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    25   9.9  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    25   9.9  

>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -3

Query: 527 INTCSAVFSSILTYAS----SPSGAISCSVNTSQ**WVIFAKSATFSGVQLC 384
           + +C+ ++ S+  Y      +    ISCS+NT +  ++I A S  +S  QLC
Sbjct: 89  LRSCTIIYFSMNPYMLCEILNARNVISCSLNTQKFFFIIVAASNVYSIFQLC 140


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 195 WNFVFSLLLPFVTNTL 242
           WNF+ S   PF+TN++
Sbjct: 414 WNFLISFFTPFITNSI 429


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 195 WNFVFSLLLPFVTNTL 242
           WNF+ S   PF+TN++
Sbjct: 384 WNFLISFFTPFITNSI 399


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 425 IFAKSATFSGVQLCMATVEPKLAYFFPSISCTSAGIDMDSTR 300
           I+   +TF+      + V P+  Y  P I+ TSAG + D  R
Sbjct: 201 IYGSPSTFTQFNHMSSMVTPENPYGIPPIALTSAGGNPDPLR 242


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 349 SPQFRAPQPESTWTPPGLYNFHSTP 275
           +P+F A   E TWT   L + + TP
Sbjct: 159 TPEFMAAHEEKTWTASSLNSHNLTP 183


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 216 IN*KQSSKSTTNNDAIPQQHNFHKTIQY 133
           +N K++  S TN    PQQ  FH+  Q+
Sbjct: 206 MNKKKTLSSETNKYEYPQQSKFHECSQF 233


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 195 WNFVFSLLLPFVTNTL 242
           WNF+ S   PF++N++
Sbjct: 416 WNFMISFFTPFISNSI 431


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = -1

Query: 361 WHI-SSPQFRAPQPE-STWTPPGLYNFHSTPFALTFYVPYQFNVLVTNGSNKLKTKFQVN 188
           W I S+P +   +P+ S      LYN+ +      F+  Y   V V N   +  T+FQ +
Sbjct: 400 WKIYSAPTWMLARPKFSQINTSHLYNYSTKQMISKFWETYYEEVKVVNLPEENTTEFQAS 459

Query: 187 NE*RCNPTTTQLS 149
               C     Q S
Sbjct: 460 TLLVCPVAMLQTS 472


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 195 WNFVFSLLLPFVTNTL 242
           W F+ S   PF+TN++
Sbjct: 414 WGFLISFFTPFITNSI 429


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 268 LTFYVPYQFNVLVTNGSNKLKTKFQVNN 185
           L   +PY+F+  +TN S  L T   VNN
Sbjct: 538 LNLILPYEFDPDLTNDSPGLSTTNGVNN 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,670
Number of Sequences: 5004
Number of extensions: 51662
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)