Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L01
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0001 + 12219741-12219927,12219976-12220955                       29   2.5  
01_01_0147 - 1332752-1333447,1333557-1333739                           28   4.4  
12_01_0900 - 8724339-8724380,8725263-8725376,8726491-8726559,872...    27   7.6  

>07_03_0001 + 12219741-12219927,12219976-12220955
          Length = 388

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +1

Query: 304 VESMSIPAEVHEI-EGKKYASFGSTVAIHSCTPEKV-ADFAKITHHYCDVFTEQLMAPLG 477
           V+ +++P +  E+ +     S    V  H+ +   + ADF  + H   +V   +L++ L 
Sbjct: 79  VDLLAVPCDKEELCDNASLISMPQLVNEHAISSVSLCADFKHVVHIANEVQERELLSSLN 138

Query: 478 ELAYVRIDE 504
            L YV+ D+
Sbjct: 139 TLGYVQFDD 147


>01_01_0147 - 1332752-1333447,1333557-1333739
          Length = 292

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 203 CF*FIATVCYQYIELIRNIKCQSERC*MKVIKAWWSPCRF 322
           C+  + T+C   IE I NI+C+      KV+ A  +PCRF
Sbjct: 72  CYAKMNTMCPCCIEPIGNIRCRPLE---KVLAAMSAPCRF 108


>12_01_0900 -
           8724339-8724380,8725263-8725376,8726491-8726559,
           8726665-8726824,8726905-8726961,8728080-8728258,
           8728332-8728442,8728512-8728535,8729993-8730107,
           8730665-8730720,8731595-8731807
          Length = 379

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 391 SYVWLRWNQNWHISSPQF-RAPQPES 317
           SY WL  N++ H+ +PQ  R+P+P S
Sbjct: 29  SYYWLTKNKDNHVVTPQTKRSPRPPS 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,913,654
Number of Sequences: 37544
Number of extensions: 327367
Number of successful extensions: 808
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)