Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_L01
(556 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20549| Best HMM Match : Acyltransferase (HMM E-Value=1.8e-27) 31 0.63
SB_12386| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_43292| Best HMM Match : FYRN (HMM E-Value=6.3e-15) 29 2.6
SB_40684| Best HMM Match : NIF (HMM E-Value=0) 29 2.6
SB_35214| Best HMM Match : FYRN (HMM E-Value=6.3e-15) 29 2.6
SB_48580| Best HMM Match : FYRN (HMM E-Value=6.3e-15) 29 2.6
SB_5164| Best HMM Match : FYRN (HMM E-Value=6.3e-15) 29 2.6
SB_49193| Best HMM Match : Exo_endo_phos (HMM E-Value=0.025) 29 3.4
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 29 3.4
SB_903| Best HMM Match : DUF1328 (HMM E-Value=2.4) 29 3.4
SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2) 28 5.9
SB_5625| Best HMM Match : DBR1 (HMM E-Value=1.1e-26) 28 5.9
SB_42034| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0) 27 7.8
>SB_20549| Best HMM Match : Acyltransferase (HMM E-Value=1.8e-27)
Length = 649
Score = 31.1 bits (67), Expect = 0.63
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +1
Query: 286 ESYKGLVESMSIPAEVHEIEGKKYASFGSTVAIHSCTPEKV--ADFAKITHHYCDVFTEQ 459
ES +GL++S S+ ++E G Y +FG + + SC K+ A I H T++
Sbjct: 274 ESLRGLIKSRSV---LYEDYGSIYVNFGDLIPLSSCIEGKLDRMSTACIPRHLLLYLTDE 330
Query: 460 LMAPLGELAY-VRIDENTAE 516
+ +L Y + + E T +
Sbjct: 331 EKEVVRQLGYEITVFEKTLD 350
>SB_12386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 262 MSKRTVLNESYKGLVESMSIPAEVHEIEGKKYASFGSTVAIHSCTPEKVADFAKITHHYC 441
+S + + ES K +ES + ++ EIE +KY+ G A+ S PE D + I +
Sbjct: 99 LSPESEVFESKKSRMESTEL--KMAEIEERKYSEDGEGSAVESGKPENAVDLSCIHNDKK 156
Query: 442 DVF 450
+ F
Sbjct: 157 EAF 159
>SB_43292| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
Length = 645
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 355 ISSPQFRAPQPESTWTPPGLYNFHSTPFALTFYVPYQFNVLVTNGSNKLKTK 200
+SSP+ P + T P LYN H+ P L+ P + +++ G + K K
Sbjct: 348 LSSPRKILPNIQQTVRFPALYNTHTGPNNLSSLTPSKAPQVLSKGGSARKGK 399
>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
Length = 402
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 540 LAAVDKHLFCSVLVNSHVCELTERRHQLFREHIAIVMGYFREICHLLG 397
L K ++ L+N E RH+LFREH V G + + +LG
Sbjct: 276 LFTASKRVYADKLLNILDPEKKYFRHRLFREHCVCVQGNYIKDLSILG 323
>SB_35214| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
Length = 762
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 355 ISSPQFRAPQPESTWTPPGLYNFHSTPFALTFYVPYQFNVLVTNGSNKLKTK 200
+SSP+ P + T P LYN H+ P L+ P + +++ G + K K
Sbjct: 200 LSSPRKILPNIQQTVRFPALYNTHTGPNNLSSLTPSKAPQVLSKGGSARKGK 251
>SB_48580| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
Length = 847
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 355 ISSPQFRAPQPESTWTPPGLYNFHSTPFALTFYVPYQFNVLVTNGSNKLKTK 200
+SSP+ P + T P LYN H+ P L+ P + +++ G + K K
Sbjct: 348 LSSPRKILPNIQQTVRFPALYNTHTGPNNLSSLTPSKAPQVLSKGGSARKGK 399
>SB_5164| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
Length = 435
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 355 ISSPQFRAPQPESTWTPPGLYNFHSTPFALTFYVPYQFNVLVTNGSNKLKTK 200
+SSP+ P + T P LYN H+ P L+ P + +++ G + K K
Sbjct: 348 LSSPRKILPNIQQTVRFPALYNTHTGPNNLSSLTPSKAPQVLSKGGSARKGK 399
>SB_49193| Best HMM Match : Exo_endo_phos (HMM E-Value=0.025)
Length = 236
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 498 NSHVCELTERRHQLFREHI 442
NSH+C L ER HQL HI
Sbjct: 23 NSHLCALKEREHQLKIMHI 41
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 475 RAAPSAVP*THRNSDGLFSRNLPP--SRVCSYVWLRWNQNWHISSPQFRAPQPESTWTP 305
+ APSA T S+GLF++ PP S C W+ N+ ++P+P S+ P
Sbjct: 1755 KPAPSA---TSSTSNGLFNKQAPPTGSWTCDTCWIS-NKEADSRCAACQSPKPTSSGAP 1809
>SB_903| Best HMM Match : DUF1328 (HMM E-Value=2.4)
Length = 350
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -1
Query: 328 QPESTWTPPGLYNFH 284
QPESTWTPP NFH
Sbjct: 300 QPESTWTPP---NFH 311
>SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 962
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 498 NSHVCELTERRHQLFREHI 442
NSH+C L ER HQL HI
Sbjct: 140 NSHLCALKEREHQLKIMHI 158
>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
Length = 318
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 457 VP*THRNSDGLFSRNLPPSRVCS 389
VP T+ N D L SRN PPS S
Sbjct: 102 VPSTNNNQDALSSRNRPPSESSS 124
>SB_5625| Best HMM Match : DBR1 (HMM E-Value=1.1e-26)
Length = 566
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -1
Query: 364 NWHISSPQFRAPQPESTWTPPG-LYNFHSTPFALTFYVPYQFNVLVTNGSNKLKTKFQVN 188
N+ ++ F A QP+ ++PPG + N + F L V F V GS K + ++N
Sbjct: 330 NFSVTVVPFDAAQPKKYYSPPGPVLNPQTKEFCLKLGVEIPFFV---KGSEKAENPDEIN 386
Query: 187 NE 182
E
Sbjct: 387 LE 388
>SB_42034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 504
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 310 SMSIPAEVHEIEGKKYASFGSTVAIHSCTPEKVADFAKITH 432
S I ++ HEIE K GST I S V DF +++
Sbjct: 90 SQKIVSQTHEIEKKVDGLVGSTKGIQSKVQNTVNDFLMLSN 130
>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1457
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 171 IPQQHN-FHKTIQYFLLFMFLFHIVVKV*LFRITQGMLTISK*EVCDVIMSVQPY 10
+PQ + F +T YF +F+ +VVKV I G + K D+++S + Y
Sbjct: 1312 MPQSYEVFVETTNYFFTSVFVIEVVVKV----IALGFVRYPKDSFLDLLVSKEKY 1362
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,962,522
Number of Sequences: 59808
Number of extensions: 392546
Number of successful extensions: 904
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -