Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L01
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p...    28   5.2  
AF067942-10|AAG45578.2|  358|Caenorhabditis elegans Hypothetical...    27   6.9  
AL022289-4|CAA18376.1|  511|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF099913-13|AAC68755.1|  143|Caenorhabditis elegans Hypothetical...    27   9.1  

>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
           protein 36 protein.
          Length = 1249

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 217 CYRLLPIH*TDTEHKMSKRTVLNESYKGLVE 309
           C ++L  H  +T  K+S  T+L ++Y+ LVE
Sbjct: 28  CAKVLSEHMKETFSKISHETILKQNYEKLVE 58


>AF067942-10|AAG45578.2|  358|Caenorhabditis elegans Hypothetical
           protein ZK6.1 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 175 CNPTTTQLSQNNSIFLIIY 119
           CNP + QLSQN  I L  Y
Sbjct: 203 CNPASQQLSQNGKILLTSY 221


>AL022289-4|CAA18376.1|  511|Caenorhabditis elegans Hypothetical
           protein ZK1225.5 protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 382 IHSCTPEKVADFAKITHHYCDVFT---EQLMAPLGELAYVRIDENTAEQV 522
           +H   PE+V    K+  H+ ++FT   E+ + P   L+Y  +  +   QV
Sbjct: 207 LHETDPERVDTRKKVFKHFYELFTMDREESVIPFNWLSYTGVSADLDIQV 256


>AF099913-13|AAC68755.1|  143|Caenorhabditis elegans Hypothetical
           protein C29F9.13 protein.
          Length = 143

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 175 CNPTTTQLSQNNSIFLIIY 119
           CNP   QLS+N  + L IY
Sbjct: 58  CNPALLQLSENGKLLLTIY 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,343,361
Number of Sequences: 27780
Number of extensions: 303035
Number of successful extensions: 820
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)