Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L01
         (556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61290.1 68416.m06859 hypothetical protein                          31   0.52 
At1g76850.1 68414.m08943 expressed protein                             28   4.8  
At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR ...    28   4.8  
At5g60010.1 68418.m07525 ferric reductase-like transmembrane com...    27   6.4  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    27   8.4  
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    27   8.4  
At1g41830.1 68414.m04829 multi-copper oxidase type I family prot...    27   8.4  

>At3g61290.1 68416.m06859 hypothetical protein
          Length = 455

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 340 FRAPQPESTWTPPGLYNF--HSTPFALTF 260
           FR P+P +TW PP L+ +  H   + + F
Sbjct: 137 FRQPEPNATWPPPPLFQYCGHREAYGIVF 165


>At1g76850.1 68414.m08943 expressed protein
          Length = 1090

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -1

Query: 322 ESTWTPPGLYNFHSTPFALTFYVPYQFNVLVTNGSNKL 209
           E TW P  +   + +P+A++ Y+P  F  ++ +G  ++
Sbjct: 669 EETWIPVSILERNRSPYAIS-YLPLAFRSVIVSGMEQV 705


>At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 787

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +1

Query: 307 ESMSIPAEVHEIEGKKYASFGSTVAIHSCTPE---KVADFAKITHHYCDVF-TEQLMAPL 474
           E +S+P EV E+   KY      V++ S  PE   K+    KI    C +      +A L
Sbjct: 687 ELISLPVEVCELPCLKYVDISQCVSLVS-LPEKFGKLGSLEKIDMRECSLLGLPSSVAAL 745

Query: 475 GELAYVRIDENTA 513
             L +V  DE T+
Sbjct: 746 VSLRHVICDEETS 758


>At5g60010.1 68418.m07525 ferric reductase-like transmembrane
           component family protein similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], respiratory burst oxidase
           homolog from Solanum tuberosum [GI:16549089]; contains
           Pfam profile PF01794 Ferric reductase like transmembrane
           component
          Length = 839

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -2

Query: 195 KSTTNNDAIP--QQHNFHKTIQYFLLFMFLFHIVVKV 91
           +ST  N  +P     NFHK I Y + F  L H  + +
Sbjct: 381 RSTFLNRVVPFDDNINFHKVIAYMIAFQALLHTALHI 417


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 370 NQNWHISSPQFRAPQPESTWTPPGLYNFHSTPFALTFYVPYQ 245
           NQ  H  SP    P P   W PP  +     P++   Y P+Q
Sbjct: 51  NQFHHPHSPS-PPPPPPPQWGPPSPHYPQGQPYSSPAYPPHQ 91


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 370 NQNWHISSPQFRAPQPESTWTPPGLYNFHSTPFALTFYVPYQ 245
           NQ  H  SP    P P   W PP  +     P++   Y P+Q
Sbjct: 51  NQFHHPHSPS-PPPPPPPQWGPPSPHYPQGQPYSSPAYPPHQ 91


>At1g41830.1 68414.m04829 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 542

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 301 LVESMSIPAEVHEIEGKKYASFGSTVAIHSCTPEKVADFAKITHHY 438
           L+ ++   +   +I GK+     S   + + TP K+ADF KI+  Y
Sbjct: 347 LIRTIVFGSSAGQINGKQRYGVNSVSFVPADTPLKLADFFKISGVY 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,170,967
Number of Sequences: 28952
Number of extensions: 269532
Number of successful extensions: 714
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)