Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_K23
(575 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 50 1e-06
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 50 1e-06
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 50 1e-06
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 50 1e-06
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 47 1e-05
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 40 0.002
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 36 0.015
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 36 0.019
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 36 0.026
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 36 0.026
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 35 0.045
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 34 0.059
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 34 0.059
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 34 0.078
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 33 0.10
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 33 0.10
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 33 0.10
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 33 0.14
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 33 0.14
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 33 0.18
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 33 0.18
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 33 0.18
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 32 0.24
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 32 0.32
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 32 0.32
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 32 0.32
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 31 0.42
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 31 0.55
At2g19540.1 68415.m02283 transducin family protein / WD-40 repea... 31 0.73
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 31 0.73
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea... 31 0.73
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 30 0.96
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 30 0.96
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 30 0.96
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 30 1.3
At1g60420.1 68414.m06802 DC1 domain-containing protein contains ... 30 1.3
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 30 1.3
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 30 1.3
At2g34260.2 68415.m04192 transducin family protein / WD-40 repea... 29 1.7
At2g34260.1 68415.m04191 transducin family protein / WD-40 repea... 29 1.7
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 29 2.2
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 29 2.2
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 29 2.9
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea... 28 3.9
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea... 28 3.9
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 28 5.1
At2g38290.2 68415.m04703 ammonium transporter 2 (AMT2) identical... 28 5.1
At2g38290.1 68415.m04704 ammonium transporter 2 (AMT2) identical... 28 5.1
At4g32490.1 68417.m04625 plastocyanin-like domain-containing pro... 27 6.8
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 27 6.8
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 27 6.8
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 27 6.8
At2g41410.1 68415.m05110 calmodulin, putative identical to SP|P3... 27 6.8
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 27 9.0
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 27 9.0
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 27 9.0
At3g52190.1 68416.m05731 transducin family protein / WD-40 repea... 27 9.0
At1g76940.1 68414.m08957 RNA recognition motif (RRM)-containing ... 27 9.0
At1g14910.1 68414.m01782 epsin N-terminal homology (ENTH) domain... 27 9.0
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/89 (31%), Positives = 48/89 (53%)
Frame = +1
Query: 148 KTKKMYFLSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKV 327
+ K + L+GH ++ +V P G + SG ++ + KIWD +KK I +++ H
Sbjct: 183 EAKVVRTLTGHRSNCVSVNFHPFGEFFASGSLD-----TNLKIWDIRKKGCIHTYKGHTR 237
Query: 328 RVEALTFSSDERYMISLGGRDDGYVVLWD 414
V L F+ D R+++S G +D V +WD
Sbjct: 238 GVNVLRFTPDGRWIVS--GGEDNVVKVWD 264
Score = 28.3 bits (60), Expect = 3.9
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Frame = +1
Query: 79 LKVHPDGEHVVYPMGNKVCIQEWKT---KKMYFLSGHTNSVSTVALSPKGTYVGSGQINH 249
L+ PDG +V G ++ W K ++ H + ++ P + +G +
Sbjct: 242 LRFTPDGRWIVSG-GEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHEFLLATGSADK 300
Query: 250 IGFKASAKIWDFKKKAQIGSHELHKVRVEALTFSSDERYMI 372
+ K WD + IGS V LTF+ D + ++
Sbjct: 301 -----TVKFWDLETFELIGSGGTETTGVRCLTFNPDGKSVL 336
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 28 NLETYAIIGFDGS---AIRGLKVHPDGEHVVYPMGNKVCIQEWK 150
+LET+ +IG G+ +R L +PDG+ V+ + + I W+
Sbjct: 306 DLETFELIGSGGTETTGVRCLTFNPDGKSVLCGLQESLKIFSWE 349
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 49.6 bits (113), Expect = 1e-06
Identities = 27/82 (32%), Positives = 45/82 (54%)
Frame = +1
Query: 169 LSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTF 348
L+GH ++ +V P G + SG ++ + KIWD +KK I +++ H V L F
Sbjct: 97 LTGHRSNCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKGCIHTYKGHTRGVNVLRF 151
Query: 349 SSDERYMISLGGRDDGYVVLWD 414
+ D R+++S G +D V +WD
Sbjct: 152 TPDGRWVVS--GGEDNIVKVWD 171
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 28 NLETYAIIGFDG---SAIRGLKVHPDGEHVVYPMGNKVCIQEWK 150
+LET+ +IG G + +R L +PDG+ V+ + + I W+
Sbjct: 213 DLETFELIGSGGPETAGVRCLSFNPDGKTVLCGLQESLKIFSWE 256
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 49.6 bits (113), Expect = 1e-06
Identities = 27/82 (32%), Positives = 45/82 (54%)
Frame = +1
Query: 169 LSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTF 348
L+GH ++ +V P G + SG ++ + KIWD +KK I +++ H V L F
Sbjct: 97 LTGHRSNCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKGCIHTYKGHTRGVNVLRF 151
Query: 349 SSDERYMISLGGRDDGYVVLWD 414
+ D R+++S G +D V +WD
Sbjct: 152 TPDGRWVVS--GGEDNIVKVWD 171
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 28 NLETYAIIGFDG---SAIRGLKVHPDGEHVVYPMGNKVCIQEWK 150
+LET+ +IG G + +R L +PDG+ V+ + + I W+
Sbjct: 213 DLETFELIGSGGPETAGVRCLSFNPDGKTVLCGLQESLKIFSWE 256
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 49.6 bits (113), Expect = 1e-06
Identities = 28/89 (31%), Positives = 49/89 (55%)
Frame = +1
Query: 148 KTKKMYFLSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKV 327
+ K + +GH ++ S V P G ++ SG + A+ KIWD +KK I +++ H
Sbjct: 89 EAKMVRAFTGHRSNCSAVEFHPFGEFLASGSSD-----ANLKIWDIRKKGCIQTYKGHSR 143
Query: 328 RVEALTFSSDERYMISLGGRDDGYVVLWD 414
+ + F+ D R+++S GG D+ V +WD
Sbjct: 144 GISTIRFTPDGRWVVS-GGLDN-VVKVWD 170
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 28 NLETYAIIGF---DGSAIRGLKVHPDGEHVVYPMGNKVCIQEWK 150
+LET+ +IG + + +R +K HPDG + + + + + W+
Sbjct: 212 DLETFELIGSTRPEATGVRSIKFHPDGRTLFCGLDDSLKVYSWE 255
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/89 (29%), Positives = 49/89 (55%)
Frame = +1
Query: 148 KTKKMYFLSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKV 327
++K + +GH ++ S V P G ++ SG + + ++WD +KK I +++ H
Sbjct: 38 ESKMVRAFTGHRSNCSAVEFHPFGEFLASGSSD-----TNLRVWDTRKKGCIQTYKGHTR 92
Query: 328 RVEALTFSSDERYMISLGGRDDGYVVLWD 414
+ + FS D R+++S GG D+ V +WD
Sbjct: 93 GISTIEFSPDGRWVVS-GGLDN-VVKVWD 119
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 28 NLETYAIIGF---DGSAIRGLKVHPDGEHVVYPMGNKVCIQEWK 150
+LET+ +IG + + +R + HPDG+ + + + + + W+
Sbjct: 161 DLETFELIGTTRPEATGVRAIAFHPDGQTLFCGLDDGLKVYSWE 204
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/82 (35%), Positives = 43/82 (52%)
Frame = +1
Query: 169 LSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTF 348
L+GHT VSTVA+SP G+ SG G +WD + ++ S E + V + AL F
Sbjct: 190 LAGHTGYVSTVAVSPDGSLCASG-----GKDGVVLLWDLAEGKKLYSLEANSV-IHALCF 243
Query: 349 SSDERYMISLGGRDDGYVVLWD 414
S + RY + + G + +WD
Sbjct: 244 SPN-RYWL-CAATEHG-IKIWD 262
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 36.3 bits (80), Expect = 0.015
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +1
Query: 64 SAIRGLKVHPDGEHVVYPMGNKVC-IQEWKTKKMYF-LSGHTNSVSTVALSPKGTYVGSG 237
S + L +HP + ++ + VC + + +TK F LSGH N+V +V P V +G
Sbjct: 261 SGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQIFALSGHDNTVCSVFTRPTDPQVVTG 320
Query: 238 QINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTFSSDERYMIS 375
+H + K WD + + + HK V A+T E S
Sbjct: 321 --SH---DTTIKFWDLRYGKTMSTLTHHKKSVRAMTLHPKENAFAS 361
Score = 30.3 bits (65), Expect = 0.96
Identities = 24/82 (29%), Positives = 36/82 (43%)
Frame = +1
Query: 169 LSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTF 348
L+GH V +A+S + TY+ S G K WD ++ I S+ H V L
Sbjct: 214 LTGHIEQVRGLAVSNRHTYMFSA-----GDDKQVKCWDLEQNKVIRSYHGHLSGVYCLAL 268
Query: 349 SSDERYMISLGGRDDGYVVLWD 414
+++ GGR D +WD
Sbjct: 269 HPTLDVLLT-GGR-DSVCRVWD 288
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 35.9 bits (79), Expect = 0.019
Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 1/130 (0%)
Frame = +1
Query: 169 LSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTF 348
L GHT ++S V S G + S ++ + +W + I +E H + L +
Sbjct: 39 LEGHTAAISCVKFSNDGNLLASASVDK-----TMILWSATNYSLIHRYEGHSSGISDLAW 93
Query: 349 SSDERYMISLGGRDDGYVVLWDCVXXXXXXXXXXXXXXXXXXMTLTALNARVNSFVTGG- 525
SSD Y S DD + +WD + N N V+G
Sbjct: 94 SSDSHYTCS--ASDDCTLRIWD---ARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGSF 148
Query: 526 DSNLRVWNIR 555
D +R+W ++
Sbjct: 149 DETIRIWEVK 158
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 35.5 bits (78), Expect = 0.026
Identities = 20/82 (24%), Positives = 41/82 (50%)
Frame = +1
Query: 169 LSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTF 348
++GH +V V+ SP G + SG + + ++WD + + + + HK V + +
Sbjct: 105 IAGHAEAVLCVSFSPDGKQLASGSGD-----TTVRLWDLYTETPLFTCKGHKNWVLTVAW 159
Query: 349 SSDERYMISLGGRDDGYVVLWD 414
S D ++++S G G + W+
Sbjct: 160 SPDGKHLVS--GSKSGEICCWN 179
Score = 31.5 bits (68), Expect = 0.42
Identities = 21/82 (25%), Positives = 38/82 (46%)
Frame = +1
Query: 169 LSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTF 348
L+GH V+ V SP G ++ S F S ++W+ + H V +++
Sbjct: 356 LTGHQQLVNHVYFSPDGKWIASA-----SFDKSVRLWNGITGQFVTVFRGHVGPVYQVSW 410
Query: 349 SSDERYMISLGGRDDGYVVLWD 414
S+D R ++S G D + +W+
Sbjct: 411 SADSRLLLS--GSKDSTLKIWE 430
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 67 AIRGLKVHPDGEHVVYPMGNKVCIQEWKT---KKMYFLSGHTNSVSTVALSPKGTYVGSG 237
A+ + PDG+ + G+ ++ W ++ GH N V TVA SP G ++ SG
Sbjct: 111 AVLCVSFSPDGKQLASGSGDTT-VRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSG 169
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 35.5 bits (78), Expect = 0.026
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = +1
Query: 145 WKTKK--MYFLSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHEL 318
WKT + GH + ++ VA P G Y+G+ + + ++WD A++ E
Sbjct: 325 WKTDGTLLQTFEGHLDRLARVAFHPSGKYLGT-----TSYDKTWRLWDINTGAELLLQEG 379
Query: 319 HKVRVEALTFSSDERYMISLGGRDDGYVVLWD 414
H V + F D S G D +WD
Sbjct: 380 HSRSVYGIAFQQDGALAASCG--LDSLARVWD 409
Score = 31.1 bits (67), Expect = 0.55
Identities = 18/79 (22%), Positives = 31/79 (39%)
Frame = +1
Query: 154 KKMYFLSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRV 333
+ + GH V +V SP G ++ SG G +IWD + + + H V
Sbjct: 414 RSILVFQGHIKPVFSVNFSPNGYHLASG-----GEDNQCRIWDLRMRKSLYIIPAHANLV 468
Query: 334 EALTFSSDERYMISLGGRD 390
+ + E Y ++ D
Sbjct: 469 SQVKYEPQEGYFLATASYD 487
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 34.7 bits (76), Expect = 0.045
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +1
Query: 163 YFLSGHTNSVSTVALSPKGT--YVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVE 336
+ L H V+ V G Y+ +G +H +AK+WD++ K+ + + E H V
Sbjct: 179 FTLDAHLKGVNCVDYFTGGDKPYLITGSDDH-----TAKVWDYQTKSCVQTLEGHTHNVS 233
Query: 337 ALTFSSDERYMISLGGRDDGYVVLW 411
A++F + +I+ G +DG V +W
Sbjct: 234 AVSFHPELPIIIT--GSEDGTVRIW 256
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 34.3 bits (75), Expect = 0.059
Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 4/169 (2%)
Frame = +1
Query: 58 DGSAIRGLKVHPDGEHVVYPMGNKVCIQEWKTKKMYFL---SGHTNSVSTVALSPKGTYV 228
+ + L + PD + +++ G+ I+ W + + + GH V +A G
Sbjct: 59 ESDTLTALALSPD-DKLLFSAGHSRQIRVWDLETLKCIRSWKGHEGPVMGMACHASG--- 114
Query: 229 GSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTFSSDERYMISLGGRDDGYVVL 408
G + G +WD HK V ++ F D I + G DD V +
Sbjct: 115 --GLLATAGADRKVLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNILISGSDDATVRV 172
Query: 409 WDCVXXXXXXXXXXXXXXXXXXMTLTALNA-RVNSFVTGGDSNLRVWNI 552
WD +T AL+ + F G D + +W++
Sbjct: 173 WDLNAKNTEKKCLAIMEKHFSAVTSIALSEDGLTLFSAGRDKVVNLWDL 221
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 34.3 bits (75), Expect = 0.059
Identities = 19/79 (24%), Positives = 32/79 (40%)
Frame = +1
Query: 154 KKMYFLSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRV 333
+ + GH V +V SP G ++ SG G +IWD + + + H V
Sbjct: 163 RNILIFQGHIKQVLSVDFSPNGYHLASG-----GEDNQCRIWDLRMRKLLYIIPAHVNLV 217
Query: 334 EALTFSSDERYMISLGGRD 390
+ + ERY ++ D
Sbjct: 218 SQVKYEPQERYFLATASHD 236
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 33.9 bits (74), Expect = 0.078
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +1
Query: 163 YFLSGHTNSVSTVALSPKGT--YVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVE 336
+ L H V+ V G Y+ +G +H +AK+WD++ K+ + + E H V
Sbjct: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDH-----TAKVWDYQTKSCVQTLEGHTHNVS 233
Query: 337 ALTFSSDERYMISLGGRDDGYVVLW 411
A+ F + +I+ G +DG V +W
Sbjct: 234 AVCFHPELPIIIT--GSEDGTVRIW 256
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 33.5 bits (73), Expect = 0.10
Identities = 33/141 (23%), Positives = 55/141 (39%)
Frame = +1
Query: 142 EWKTKKMYFLSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELH 321
E TK+ + L GH +V + G Y + G + ++W+ + I +++ H
Sbjct: 5 ELPTKEAHILKGHEGAVLAARFNGDGNYALT-----CGKDRTIRLWNPHRGILIKTYKSH 59
Query: 322 KVRVEALTFSSDERYMISLGGRDDGYVVLWDCVXXXXXXXXXXXXXXXXXXMTLTALNAR 501
V + +SD S GG D V WD V + ++
Sbjct: 60 GREVRDVHVTSDNAKFCSCGG--DRQVYYWD-VSTGRVIRKFRGHDGEVNAVKFNDSSSV 116
Query: 502 VNSFVTGGDSNLRVWNIRAET 564
V S G D +LRVW+ R+ +
Sbjct: 117 VVS--AGFDRSLRVWDCRSHS 135
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 33.5 bits (73), Expect = 0.10
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Frame = +1
Query: 88 HPDGEHVVYPMGNKVCIQEWKTKK---MYFLSGHTNSVSTVALSPKGTYVGSGQINHIGF 258
HP+ ++ +K ++ W + + GH + V ++A+SP G Y+ SG +
Sbjct: 508 HPNCNYIATGSSDKT-VRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMASGDED---- 562
Query: 259 KASAKIWDFKKKAQIGSHELHKVRVEALTFSSDERYMISLGGRDDGYVVLWD 414
+ +WD I H V +L++S + + S G D V LWD
Sbjct: 563 -GTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSLLAS--GSADCTVKLWD 611
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +1
Query: 169 LSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTF 348
+SGHT+ V +V SP G + +G + + ++WD K +A I + H +V ++ F
Sbjct: 239 MSGHTSWVLSVDASPDGGAIATGSSDR-----TVRLWDLKMRAAIQTMSNHNDQVWSVAF 293
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 33.1 bits (72), Expect = 0.14
Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 5/129 (3%)
Frame = +1
Query: 175 GHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELH----KVRVEAL 342
GH V+TV P G G+G + + +++D + Q+ ++ H V ++
Sbjct: 184 GHEGDVNTVKFFPDGYRFGTGSDD-----GTCRLYDIRTGHQLQVYQPHGDGENGPVTSI 238
Query: 343 TFSSDERYMISLGGRDDGYVVLWDCVXXXXXXXXXXXXXXXXXXMTLTALNARVNSFVTG 522
FS R + + G + +WD + ++ L+A ++ TG
Sbjct: 239 AFSVSGRLLFA-GYASNNTCYVWDTLLGEVVLDLGLQQDSHRNRISCLGLSADGSALCTG 297
Query: 523 G-DSNLRVW 546
DSNL++W
Sbjct: 298 SWDSNLKIW 306
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 33.1 bits (72), Expect = 0.14
Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 5/129 (3%)
Frame = +1
Query: 175 GHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELH----KVRVEAL 342
GH V+TV P G G+G + + +++D + Q+ ++ H V ++
Sbjct: 246 GHEGDVNTVKFFPDGYRFGTGSDD-----GTCRLYDIRTGHQLQVYQPHGDGENGPVTSI 300
Query: 343 TFSSDERYMISLGGRDDGYVVLWDCVXXXXXXXXXXXXXXXXXXMTLTALNARVNSFVTG 522
FS R + + G + +WD + ++ L+A ++ TG
Sbjct: 301 AFSVSGRLLFA-GYASNNTCYVWDTLLGEVVLDLGLQQDSHRNRISCLGLSADGSALCTG 359
Query: 523 G-DSNLRVW 546
DSNL++W
Sbjct: 360 SWDSNLKIW 368
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 32.7 bits (71), Expect = 0.18
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +1
Query: 163 YFLSGHTNSVSTVALSPKGT--YVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVE 336
+ L H V+ V G Y+ +G +H +AK+WD++ K+ + + + H V
Sbjct: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDH-----TAKVWDYQTKSCVQTLDGHTHNVS 233
Query: 337 ALTFSSDERYMISLGGRDDGYVVLW 411
A+ F + +I+ G +DG V +W
Sbjct: 234 AVCFHPELPIIIT--GSEDGTVRIW 256
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 32.7 bits (71), Expect = 0.18
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +1
Query: 163 YFLSGHTNSVSTVALSPKGT--YVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVE 336
+ L H V+ V G Y+ +G +H +AK+WD++ K+ + + + H V
Sbjct: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDH-----TAKVWDYQTKSCVQTLDGHTHNVS 233
Query: 337 ALTFSSDERYMISLGGRDDGYVVLW 411
A+ F + +I+ G +DG V +W
Sbjct: 234 AVCFHPELPIIIT--GSEDGTVRIW 256
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 32.7 bits (71), Expect = 0.18
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +1
Query: 163 YFLSGHTNSVSTVALSPKGT--YVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVE 336
+ L H V+ V G Y+ +G +H +AK+WD++ K+ + + + H V
Sbjct: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDH-----TAKVWDYQTKSCVQTLDGHTHNVS 233
Query: 337 ALTFSSDERYMISLGGRDDGYVVLW 411
A+ F + +I+ G +DG V +W
Sbjct: 234 AVCFHPELPIIIT--GSEDGTVRIW 256
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 32.3 bits (70), Expect = 0.24
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = +1
Query: 169 LSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTF 348
L+GH+ ++TVA+SP G+ SG G +WD + ++ S E + + +L F
Sbjct: 189 LAGHSGYLNTVAVSPDGSLCASG-----GKDGVILLWDLAEGKKLYSLEAGSI-IHSLCF 242
Query: 349 SSDERYMISLGGRDDGYVVLWD 414
S + RY L + + +WD
Sbjct: 243 SPN-RYW--LCAATENSIRIWD 261
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 31.9 bits (69), Expect = 0.32
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +1
Query: 307 SHELHKVRVEALTFSSDERYMISLGGRDDGYVVLWDCVXXXXXXXXXXXXXXXXXXMTLT 486
+++ H V A+ F D ++M S G +DG V +WD +
Sbjct: 73 TYDSHTNNVMAVGFQCDAKWMYS--GSEDGTVKIWDL-----RAPGCQKEYESVAAVNTV 125
Query: 487 ALNARVNSFVTGGDS-NLRVWNIRAET 564
L+ ++G + N+RVW++RA +
Sbjct: 126 VLHPNQTELISGDQNGNIRVWDLRANS 152
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 31.9 bits (69), Expect = 0.32
Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 5/169 (2%)
Frame = +1
Query: 64 SAIRGLKVHPDGEHVVYPMGNKVCIQEWKT----KKMYFLSGHTNSVSTVALSPKGTYVG 231
SA+ +K +P G + ++ I W+ K L GH N++ + + G+ +
Sbjct: 54 SAVYTMKFNPAGTLIASGSHDRE-IFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIV 112
Query: 232 SGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTFSSDERYMISLGGRDDGYVVLW 411
S + + + WD + QI H V + + +I + G DDG LW
Sbjct: 113 SASPDK-----TVRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI-ISGSDDGTAKLW 166
Query: 412 DCVXXXXXXXXXXXXXXXXXXMTLTALNARVNSFVTGG-DSNLRVWNIR 555
D +T + + + TGG D++++VW++R
Sbjct: 167 D-----MRQRGAIQTFPDKYQITAVSFSDAADKIFTGGVDNDVKVWDLR 210
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 169 LSGHTNSVSTVALSPKGTYVGSG 237
LSGH ++V T+ +P GT + SG
Sbjct: 49 LSGHPSAVYTMKFNPAGTLIASG 71
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +1
Query: 91 PDGEHVVYPMGNKVCIQEWKT---KKMYFLSGHTNSVSTVALSPKGTYVGS 234
PDG V +++ + W T + +Y L GHT SV+ P +GS
Sbjct: 282 PDGTKVTAGSSDRM-VHIWDTTSRRTIYKLPGHTGSVNECVFHPTEPIIGS 331
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 31.9 bits (69), Expect = 0.32
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = +1
Query: 169 LSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTF 348
L GH N + ++ KG V S A +W+ +G + H + V L F
Sbjct: 596 LYGHGNELFSLCSDHKGNLVASSCKAQSASMAEIWLWEVGTWKAVGRLQSHSLTVTHLEF 655
Query: 349 SSDERYMISLGGRDDGYVV 405
S D+ ++S+ RD + V
Sbjct: 656 SYDDTLLLSV-SRDRHFSV 673
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 31.5 bits (68), Expect = 0.42
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 187 SVSTVALSPKGTYVGSGQINH-IGFKASAKIWDFKKKAQIGSHELHKVRVEALTFSSDER 363
SV+ VA SP G ++G H I A + D ++ +I + H V L F++ R
Sbjct: 409 SVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEI---DAHVGAVNDLAFANPNR 465
Query: 364 YMISLGGRDDGYVVLWD 414
+ + DD + +WD
Sbjct: 466 QLCVITCGDDKLIKVWD 482
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 31.1 bits (67), Expect = 0.55
Identities = 24/82 (29%), Positives = 40/82 (48%)
Frame = +1
Query: 169 LSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTF 348
L GH+ ++TVA+SP G+ SG G +WD + ++ S E + + +L F
Sbjct: 189 LVGHSGYLNTVAVSPDGSLCASG-----GKDGVILLWDLAEGKKLYSLEAGSI-IHSLCF 242
Query: 349 SSDERYMISLGGRDDGYVVLWD 414
S + RY L + + +WD
Sbjct: 243 SPN-RYW--LCAATENSIRIWD 261
>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
family protein contains WD-40 repeats (PF00400); similar
to Glutamate-rich WD repeat protein (GRWD)
(SP:Q9BQ67)[Homo sapiens]
Length = 469
Score = 30.7 bits (66), Expect = 0.73
Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 3/142 (2%)
Frame = +1
Query: 145 WKTKKMYFLSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKK-KAQIGSHELH 321
W + F +GHT SV + SP V + S +WD + K+ S + H
Sbjct: 258 WAVDPIPF-AGHTASVEDLQWSPAEENVFAS----CSVDGSVAVWDIRLGKSPALSFKAH 312
Query: 322 KVRVEALTFSSDERYMISLGGRDDGYVVLWDCVXXXXXXXXXXXXXXXXXXMTLTALNAR 501
V ++++ M++ G DDG + D +T +A
Sbjct: 313 NADVNVISWNRLASCMLA-SGSDDGTFSIRDLRLIKGGDAVVAHFEYHKHPITSIEWSAH 371
Query: 502 VNSF--VTGGDSNLRVWNIRAE 561
S VT GD+ L +W++ E
Sbjct: 372 EASTLAVTSGDNQLTIWDLSLE 393
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 30.7 bits (66), Expect = 0.73
Identities = 16/61 (26%), Positives = 24/61 (39%)
Frame = +1
Query: 376 LGGRDDGYVVLWDCVXXXXXXXXXXXXXXXXXXMTLTALNARVNSFVTGGDSNLRVWNIR 555
L G +DG +WDC ++ AL+ + V G NL +WN+
Sbjct: 217 LTGSEDGTARIWDCKTGKCVKVIGSQDKKSRLRVSSMALDGSESWLVCGQGKNLALWNLP 276
Query: 556 A 558
A
Sbjct: 277 A 277
>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to damage-specific DNA-binding protein 2 (DDB2)
[Mus musculus]
Length = 516
Score = 30.7 bits (66), Expect = 0.73
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 274 IWDFKKKAQIGSHELHKVRVEALTFSSDERYMISLGGRDDGYVVLWD 414
+WD + + ELH+ R+ ++ F+ ++++ DG LWD
Sbjct: 332 VWDLRAGKSVFHWELHERRINSIDFNPQNPHVMATSS-TDGTACLWD 377
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 30.3 bits (65), Expect = 0.96
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 154 KKMYFLSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKK 291
K + +GH V ++A SP G Y+ SG ++ S IW K+
Sbjct: 532 KMLCSFNGHREPVYSLAFSPNGEYIASGSLD-----KSIHIWSIKE 572
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 30.3 bits (65), Expect = 0.96
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 1/129 (0%)
Frame = +1
Query: 178 HTNSVSTVALSP-KGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTFSS 354
HT +V +A P + T + +G +G K W+ A + S E +V +L +S
Sbjct: 297 HTAAVRALAWCPFQATLLATG--GGVG-DGKIKFWNTHTGACLNSVETGS-QVCSLLWSQ 352
Query: 355 DERYMISLGGRDDGYVVLWDCVXXXXXXXXXXXXXXXXXXMTLTALNARVNSFVTGGDSN 534
ER ++S G + LW M + V S GD N
Sbjct: 353 RERELLSSHGFTQNQLTLWK-YPSMSKMAELNGHTSRVLFMAQSPNGCTVAS--AAGDEN 409
Query: 535 LRVWNIRAE 561
LR+WN+ E
Sbjct: 410 LRLWNVFGE 418
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 30.3 bits (65), Expect = 0.96
Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 1/176 (0%)
Frame = +1
Query: 37 TYAIIGFDGSAIRGLKVHPDGEHVVYPMGNKVCIQEWKTKKMYFLSGHTNSVSTVALSP- 213
T + G S + ++VV+ + + + ++ HT +V +A P
Sbjct: 252 TEEVCGLKWSESGNKQASGGNDNVVHIWDRSLASSKQTRQWLHRFEEHTAAVRALAWCPF 311
Query: 214 KGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTFSSDERYMISLGGRDD 393
+ + + +G +G K W+ A + S E +V +L +S ER ++S G
Sbjct: 312 QASLLATG--GGVG-DGKIKFWNTHTGACLNSVETGS-QVCSLLWSQSERELLSSHGFTQ 367
Query: 394 GYVVLWDCVXXXXXXXXXXXXXXXXXXMTLTALNARVNSFVTGGDSNLRVWNIRAE 561
+ LW M + V S GD NLR+WN+ E
Sbjct: 368 NQLTLWK-YPSMSKMAELNGHTSRVLFMAQSPNGCTVAS--AAGDENLRLWNVFGE 420
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 29.9 bits (64), Expect = 1.3
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 169 LSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSH--ELHKVRVEAL 342
L+GH V +A+S + TY+ S G K WD ++ I S+ LH V AL
Sbjct: 208 LTGHIGQVRGLAVSNRHTYMFSA-----GDDKQVKCWDLEQNKVIRSYHGHLHGVYCLAL 262
Query: 343 TFSSDERYMISLGGRDDGYVVLWD 414
+ D ++ GGR D +WD
Sbjct: 263 HPTLD---VVLTGGR-DSVCRVWD 282
>At1g60420.1 68414.m06802 DC1 domain-containing protein contains
Pfam domain PF03107: DC1 domain
Length = 578
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 61 GSAIRGLKVHPDGEHVVYPMGNKVCIQEWKTKKMYFLSGHTNSVSTVALSPK 216
G +R + V P + V+ P GNKV + E + K + L + L+PK
Sbjct: 173 GQTLRSVLVTPSRDFVISPDGNKVPVSELEGKTIGLLFSVASYRKCTELTPK 224
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 274 IWDFKKKAQIGSHELHKVRVEALTFSSDERYMISLGGRDDGYVVLWD 414
+WD++ + I + H V +T+S D + + + G DD V +W+
Sbjct: 333 VWDWRTETYILKQQGHYFDVNCVTYSPDSQLLAT--GADDNKVKVWN 377
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 274 IWDFKKKAQIGSHELHKVRVEALTFSSDERYMISLGGRDDGYVVLWD 414
+WD++ + I + H V +T+S D + + + G DD V +W+
Sbjct: 373 VWDWRTETYILKQQGHYFDVNCVTYSPDSQLLAT--GADDNKVKVWN 417
>At2g34260.2 68415.m04192 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 296
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = +1
Query: 172 SGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTFS 351
+ H ++V+T+ ++ T + SG K KIWD ++++ H+ + +TF+
Sbjct: 34 NAHEDAVNTL-INVTETTIASGDD-----KGCVKIWDTRQRSCSHEFNAHEDYISGMTFA 87
Query: 352 SDERYMISLGG 384
SD ++ G
Sbjct: 88 SDSMKLVVTSG 98
>At2g34260.1 68415.m04191 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 353
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = +1
Query: 172 SGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTFS 351
+ H ++V+T+ ++ T + SG K KIWD ++++ H+ + +TF+
Sbjct: 91 NAHEDAVNTL-INVTETTIASGDD-----KGCVKIWDTRQRSCSHEFNAHEDYISGMTFA 144
Query: 352 SDERYMISLGG 384
SD ++ G
Sbjct: 145 SDSMKLVVTSG 155
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 289 KKAQIGSHELHKVRVEALTFSSDERYMISLGGRDDGYVVLWD 414
+ A +G +HK V L F++ +++ G DDG + +WD
Sbjct: 111 ENALVGHLSVHKGPVRGLEFNAISSNLLA-SGADDGEICIWD 151
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 289 KKAQIGSHELHKVRVEALTFSSDERYMISLGGRDDGYVVLWD 414
+ A +G +HK V L F++ +++ G DDG + +WD
Sbjct: 111 ENALVGHLSVHKGPVRGLEFNAISSNLLA-SGADDGEICIWD 151
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/80 (26%), Positives = 35/80 (43%)
Frame = +1
Query: 169 LSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKVRVEALTF 348
L GHT+SV + PK S + S ++WD + EL + +T+
Sbjct: 62 LKGHTDSVDQLCWDPK----HSDLVATASGDKSVRLWDARSGKCTQQVELSGENIN-ITY 116
Query: 349 SSDERYMISLGGRDDGYVVL 408
D + +++G RDD +L
Sbjct: 117 KPDGTH-VAVGNRDDELTIL 135
>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
family protein contains 6 (3 significant) WD-40 repeats;
similar to PC326 protein (GI:200241) (PIR2:S37694)
[Mus musculus]; Human (H326) mRNA, Homo sapiens,
gb:U06631
Length = 496
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 313 ELHKVRVEALTFSSDERYMISLGGRDDGYVVLWD 414
E HK V ++F+++ +IS G DD VVLWD
Sbjct: 56 EKHKGCVNTVSFNAEGDVLIS--GSDDRRVVLWD 87
>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to guanine nucleotide-binding protein beta 5
(GI:1001939) [Mesocricetus auratus]
Length = 425
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 331 VEALTFSSDERYMISLGGRDDGYVVLWD 414
V + FS D Y+ + GGR D Y++ WD
Sbjct: 258 VTHVQFSKDGNYLYT-GGRKDPYILCWD 284
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 27.9 bits (59), Expect = 5.1
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 15/81 (18%)
Frame = +1
Query: 217 GTYVGSGQINHIGFKASAKIWDFKKKAQI-----GSHELH----------KVRVEALTFS 351
G G G++ KIW +K+ QI S LH +V V ++ S
Sbjct: 219 GLVAGDGRVYSASADGKVKIWGKEKRKQIESTSSSSSSLHVLKATLEGRAEVSVNSVVVS 278
Query: 352 SDERYMISLGGRDDGYVVLWD 414
D ++ GG DG+V+ W+
Sbjct: 279 GDGNWV--YGGGSDGFVIGWE 297
>At2g38290.2 68415.m04703 ammonium transporter 2 (AMT2) identical to
SP|Q9M6N7 Ammonium transporter 2 (AtAMT2) {Arabidopsis
thaliana}
Length = 359
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 7 KVDMDLKNLETYAIIGFDGSAIRGLKVHPDGEHVVYPM 120
KVD L T+A+ G G + GL HPD +V P+
Sbjct: 215 KVDDTLAVFYTHAVAGLLGGIMTGLFAHPDLCVLVLPL 252
>At2g38290.1 68415.m04704 ammonium transporter 2 (AMT2) identical to
SP|Q9M6N7 Ammonium transporter 2 (AtAMT2) {Arabidopsis
thaliana}
Length = 475
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 7 KVDMDLKNLETYAIIGFDGSAIRGLKVHPDGEHVVYPM 120
KVD L T+A+ G G + GL HPD +V P+
Sbjct: 331 KVDDTLAVFYTHAVAGLLGGIMTGLFAHPDLCVLVLPL 368
>At4g32490.1 68417.m04625 plastocyanin-like domain-containing
protein
Length = 221
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -2
Query: 406 GQHNHRP-DPRVI-SYSARPMRTLELRPAPCVTHGCRSEPS 290
G H+H P P S SA P+R L PAP H S P+
Sbjct: 132 GHHSHTPRHPSPSPSPSASPVRKALLSPAPIPVHKALSSPA 172
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +1
Query: 106 VVYPMGNKVCIQEWKTKKMYFLSGHTNSVSTV---ALSPKGTYVGSGQINHIGFKASAKI 276
V+Y +GN + E + K+ SG V TV L+ GT G G +A +
Sbjct: 634 VLYAVGNTLVCDELEEAKVLSWSGERFKVVTVDGILLTKAGTMTGG---TSGGMEAKSNK 690
Query: 277 WDFKK 291
WD KK
Sbjct: 691 WDDKK 695
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = +1
Query: 172 SGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSH---ELHKVRVEAL 342
S +T +V+ V SP G +G HI I+ + + +H + H V L
Sbjct: 416 SEYTAAVNRVVWSPDGGLLGVAYSKHI-----VHIYSYHGGEDLRNHLEIDAHAGNVNDL 470
Query: 343 TFSSDERYMISLGGRDDGYVVLWDCV 420
FS + + + +D + +WD V
Sbjct: 471 AFSQPNQQLCVVTCGEDKTIKVWDAV 496
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = +1
Query: 172 SGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSH---ELHKVRVEAL 342
S +T +V+ V SP G +G HI I+ + + +H + H V L
Sbjct: 416 SEYTAAVNRVVWSPDGGLLGVAYSKHI-----VHIYSYHGGEDLRNHLEIDAHAGNVNDL 470
Query: 343 TFSSDERYMISLGGRDDGYVVLWDCV 420
FS + + + +D + +WD V
Sbjct: 471 AFSQPNQQLCVVTCGEDKTIKVWDAV 496
>At2g41410.1 68415.m05110 calmodulin, putative identical to
SP|P30188 Calmodulin-like protein {Arabidopsis thaliana}
Length = 216
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = +1
Query: 187 SVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKV----RVEALTFSS 354
S+ +A GT G G + + +I+D + +I + ELH+V E T
Sbjct: 124 SLEDLASRVAGTS-GEGSVETEELREVFEIFDVDRNGKISAEELHRVFGVIGDERCTLEE 182
Query: 355 DERYMISLGGRDDGYVVLWD 414
R + ++ G DG+V D
Sbjct: 183 CMRMIATVDGNGDGFVCFDD 202
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/88 (23%), Positives = 37/88 (42%)
Frame = +1
Query: 148 KTKKMYFLSGHTNSVSTVALSPKGTYVGSGQINHIGFKASAKIWDFKKKAQIGSHELHKV 327
K + + L GH N+V L G YV +G + + K+W + S H+
Sbjct: 234 KMQNIKRLRGHRNAVYCAILDRSGRYVITGSDDRL-----VKVWSMDTAYCLASCRGHEG 288
Query: 328 RVEALTFSSDERYMISLGGRDDGYVVLW 411
+ L SS+ ++ S +D + +W
Sbjct: 289 DITDLAVSSNNIFIAS--ASNDCVIRVW 314
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 97 GEHVVYPMGNKVCIQEWKTKKM-YFLSGHTNSVSTVALSPKGTYVGS 234
G+++ N V + + +T+ + + L GH N +++V P G ++ S
Sbjct: 789 GKYLAASSANLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFLAS 835
>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
trafficking regulator - Bos taurus, EMBL: AF114785
Length = 3471
Score = 27.1 bits (57), Expect = 9.0
Identities = 20/81 (24%), Positives = 30/81 (37%)
Frame = +1
Query: 319 HKVRVEALTFSSDERYMISLGGRDDGYVVLWDCVXXXXXXXXXXXXXXXXXXMTLTALNA 498
H +V L S + YM+ DD V++WD +T+ +N
Sbjct: 3323 HTAKVICLRVS--QPYMMIASSSDDCTVIIWD----LSSLSFVRQLPNFSVPVTVVYIND 3376
Query: 499 RVNSFVTGGDSNLRVWNIRAE 561
VT S L VW+I +
Sbjct: 3377 LTGEIVTAAGSVLAVWSINGD 3397
>At3g52190.1 68416.m05731 transducin family protein / WD-40 repeat
family protein similar to St12p protein (GI:166878)
{Arabidopsis thaliana}; contains Pfam profile: PF00400
WD domain, G-beta repeat
Length = 398
Score = 27.1 bits (57), Expect = 9.0
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +1
Query: 115 PMGNKVCIQEWKTKKMYFLSGHTNSVSTVALSPKGTYVGSGQIN---HIGFKASAKIWDF 285
PM N I WK K+ F + ST+A+S G Y+ G + + + +I+ +
Sbjct: 234 PMVNVYDISTWK--KLGFKKLSRKTASTMAVSLDGKYIALGGKDGDVSVAEVKTMEIYHY 291
Query: 286 KKKAQIGSHELHKVRVEALTFSSDERYMIS 375
K+ +G + +L F ER M++
Sbjct: 292 SKRLHLGQ------SIASLEFCPSERVMLT 315
>At1g76940.1 68414.m08957 RNA recognition motif (RRM)-containing
protein contains Pfam PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to RNA-binding
protein with multiple splicing homolog (RBP-MS) (HEart,
RRM Expressed Sequence) (Hermes) (Swiss-Prot:Q9YGI5)
[Xenopus laevis]; similar to RNA-binding protein with
multiple splicing (RBP-MS) (Swiss-Prot:Q93062) [Homo
sapiens]
Length = 233
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 528 IPSGNERVDSGVQSGECHGVSCGKFSRSSGAGSGPRNTV 412
I S +R VQSGE VS G+ G G G T+
Sbjct: 57 IGSAYDRYLQSVQSGEGGSVSMGRSGGGGGGGGGNVQTI 95
>At1g14910.1 68414.m01782 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Chain A, Calm-N N-Terminal Domain Of Clathrin
Assembly Lymphoid Myeloid Leukaemia Protein, Pi(4,5)p2
Complex (GP:13399999) {Homo sapiens}
Length = 692
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Frame = +1
Query: 277 WDFKKKAQIGSHELHK-----VRVEALTFSSDERYMISLGGRDDGYVVLWDC 417
W KA + H L + R E L FS R M +DD V WDC
Sbjct: 85 WTVALKALLVIHRLLRDGDPTFREELLNFSQKGRIMQISNFKDDSSPVAWDC 136
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,760,529
Number of Sequences: 28952
Number of extensions: 270613
Number of successful extensions: 838
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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