Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K22
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   4.5  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.5  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   4.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   5.9  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
 Frame = +3

Query: 99   FFSQPSNGP----SGNYEPISTGPAFVDF 173
            F + P+N P    SG+Y PI   P F  F
Sbjct: 1560 FVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +3

Query: 129 GNYEPI--STGPAFVDFNHPNYPPKRYDNPLAR 221
           G+Y P   ST P    + +P+YPP  Y    AR
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSAR 149


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 464 DGIDKLDIEFGTRLVSSFFFFFLICYRKENF 372
           DGIDK+D++    L+  FF F +    + +F
Sbjct: 371 DGIDKIDVQNFILLILKFFGFAISASDRRSF 401


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 105 SQPSNGPSGNYEPISTGPAFVDFNHPNYPP 194
           S P N P     P+S  PA    + P  PP
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,839
Number of Sequences: 5004
Number of extensions: 32550
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)