Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K22
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70756-7|CAA94794.2|  199|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF003389-1|AAC71138.2|  865|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>Z70756-7|CAA94794.2|  199|Caenorhabditis elegans Hypothetical
           protein T06E4.8 protein.
          Length = 199

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 78  VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 194
           V A P P F+ P+  P     PI  GPAF     P   P
Sbjct: 110 VFAAPRPVFASPALAPVAPMAPILRGPAFAYAPSPVLAP 148


>Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical
           protein T06E4.9 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 78  VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 194
           V A P P F+ P+  P     P+  GPAF     P   P
Sbjct: 123 VFAAPRPVFAAPALAPVAPMAPVLRGPAFAYAPSPVLAP 161


>AF003389-1|AAC71138.2|  865|Caenorhabditis elegans Hypothetical
           protein F23H11.2 protein.
          Length = 865

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/50 (22%), Positives = 29/50 (58%)
 Frame = -2

Query: 212 RVVVSLGWIIGMIEIDERRSSAYGFIISARTV*WLREERIRVRNNNTTIV 63
           +++++L  ++ ++      SS Y  I+++  V W+RE+R R+   +  ++
Sbjct: 288 QLILNLEMLVAILH-SALMSSGYQTILTSDVVRWIREDRFRISRRSIRLI 336


>Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical
           protein K05C4.5 protein.
          Length = 656

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 63  DNSGVVIANPDPFFSQPSNGPSGNYEPIS--TGPA 161
           DNS + IA  DP  ++     +GNYE ++  TGPA
Sbjct: 214 DNSTLNIAGVDPRITELRETRNGNYEIVNRRTGPA 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,221,780
Number of Sequences: 27780
Number of extensions: 187043
Number of successful extensions: 554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)