Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K22
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    34   0.077
At5g14540.1 68418.m01704 proline-rich family protein contains pr...    28   3.8  
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    27   6.7  
At2g15520.1 68415.m01776 zinc finger protein, putative strong si...    27   6.7  

>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 33.9 bits (74), Expect = 0.077
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 69  SGVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPLARGG 227
           SG ++A P P+   P+ GP     P+S+ PA       N+P   Y  P   GG
Sbjct: 242 SGPMMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGG 294


>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +3

Query: 90  PDPFFSQPSNGPSG--NYEPISTGPAFVDFNHPNYPPKRYDNPLAR 221
           P P  S P N P    ++ P  + P+   +N P  PP  YD P  R
Sbjct: 357 PYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYDGPGGR 402


>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 111 PSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDNP 212
           PS+ PS ++ P  TGP+   + HP ++ P   D P
Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270


>At2g15520.1 68415.m01776 zinc finger protein, putative strong
           similarity to zinc finger protein [Arabidopsis thaliana]
           GI:976277
          Length = 483

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = +3

Query: 57  VVDNSGVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPLAR 221
           V++  G  +A   PF   P+    G +E  STG         N PPK    P  R
Sbjct: 377 VLNEGGSFLALSQPFTDSPTVYSPGLFETGSTGTFQKKAKQRNRPPKHARKPKPR 431


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,614,805
Number of Sequences: 28952
Number of extensions: 172858
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)