Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_K21
(384 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g36905.1 68418.m04423 RNase H domain-containing protein low s... 29 0.81
At5g01950.1 68418.m00114 leucine-rich repeat transmembrane prote... 29 1.4
At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein si... 29 1.4
At5g16100.1 68418.m01881 hypothetical protein 28 1.9
At1g64140.1 68414.m07266 expressed protein similar to putative d... 28 1.9
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 28 2.5
At3g15820.1 68416.m02002 phosphatidic acid phosphatase-related /... 27 3.3
At5g64550.1 68418.m08112 loricrin-related contains weak similari... 27 4.3
At5g09670.2 68418.m01119 loricrin-related contains weak similari... 26 7.5
At5g09670.1 68418.m01118 loricrin-related contains weak similari... 26 7.5
At4g12460.1 68417.m01971 oxysterol-binding family protein simila... 26 7.5
At3g22710.1 68416.m02865 F-box family protein contains F-box dom... 26 7.5
At1g48580.1 68414.m05432 expressed protein 26 7.5
At1g25580.1 68414.m03176 no apical meristem (NAM) family protein... 26 7.5
At1g21170.1 68414.m02647 expressed protein 26 7.5
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 26 7.5
At3g43520.1 68416.m04614 expressed protein contains Pfam profile... 26 9.9
At3g15830.1 68416.m02003 phosphatidic acid phosphatase-related /... 26 9.9
At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica... 26 9.9
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 26 9.9
>At5g36905.1 68418.m04423 RNase H domain-containing protein low
similarity to reverse transcriptase [Arabidopsis
thaliana] GI:976278; contains Pfam profile PF00075:
RNase H
Length = 633
Score = 29.5 bits (63), Expect = 0.81
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 152 HCSAGRVCEINEHG-EAICNCIQECPYETDSWGKV 253
H SA VC++ + G E I + +++CP WG++
Sbjct: 322 HLSASGVCQVCKGGDETILHVLRDCPSIAGIWGRL 356
>At5g01950.1 68418.m00114 leucine-rich repeat transmembrane protein
kinase, putative receptor protein kinases
Length = 1032
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 135 SSRLISLSGASRDSFRISETRALSASWNRLSSRLSAMPFSR 13
S R SL GA D +I + L SWN L+ + + FS+
Sbjct: 334 SLRNCSLKGALPDFSKIRHLKYLDLSWNELTGPIPSSNFSK 374
>At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein
similar to lysosomal alpha-mannosidase GI:3522867 from
[Homo sapiens]
Length = 1019
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 14 LENGMAESLDERRFQEAERARVSEILNESRDAPD 115
LENG E + RR Q + V EILNE+ P+
Sbjct: 794 LENGQIELMLHRRMQHDDIRGVGEILNETVCLPE 827
>At5g16100.1 68418.m01881 hypothetical protein
Length = 356
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 326 VFKPEPALSVQPRSPMTRSR*SLCTPCPKSRFRMDTP 216
+ PE AL +QP P R T PK R + TP
Sbjct: 306 LLSPEEALDIQPVPPHVELREEPTTRLPKQREKRQTP 342
>At1g64140.1 68414.m07266 expressed protein similar to putative
disease resistance protein GB:CAB40943 GI:4586107 from
[Arabidopsis thaliana]; weak similarity to Loricrin
(Swiss-Prot:P23490) [Homo sapiens]
Length = 646
Score = 28.3 bits (60), Expect = 1.9
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Frame = -2
Query: 179 SHRHGRRCSALSCTD--RQD*FHCQEH----RVTHSGSRRHELSQPPGIVSRPGSPPCRS 18
SH GRRC + CT + C+ H R THSG + P G C
Sbjct: 377 SHGGGRRCQSNGCTKGAQGSTMFCKAHGGGKRCTHSGCTKGAEGSTPFCKGHGGGKRCAF 436
Query: 17 RG 12
+G
Sbjct: 437 QG 438
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 27.9 bits (59), Expect = 2.5
Identities = 25/84 (29%), Positives = 33/84 (39%)
Frame = -2
Query: 254 TPCPKSRFRMDTPECSCR*LPRAR*SHRHGRRCSALSCTDRQD*FHCQEHRVTHSGSRRH 75
+P P R R +P R P R R S + R ++ R +RRH
Sbjct: 303 SPAPSRRRRSPSPPARRRRSPSP--PARRRRSPSPPARRHRSPTPPARQRRSPSPPARRH 360
Query: 74 ELSQPPGIVSRPGSPPCRSRGAPT 3
S PP R SPP R R +P+
Sbjct: 361 R-SPPPARRRRSPSPPARRRRSPS 383
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 104 RVTHSGSRRHELSQPPGIVSRPGSPPCRSRGAPT 3
R + + SRR PP R SPP R R +P+
Sbjct: 301 RQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPS 334
>At3g15820.1 68416.m02002 phosphatidic acid phosphatase-related /
PAP2-related contains Pfam profile PF01569: PAP2
superfamily
Length = 301
Score = 27.5 bits (58), Expect = 3.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 5 SEHLENGMAESLDERRFQEAERARVSEILN 94
S H+ M SLD RR Q A V +ILN
Sbjct: 214 SGHVAGSMIASLDMRRMQRLRLAMVFDILN 243
>At5g64550.1 68418.m08112 loricrin-related contains weak similarity
to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
Length = 634
Score = 27.1 bits (57), Expect = 4.3
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 125 NLDDPCMKVHC---SAGRVCEINEHGEAICNCIQECP 226
N D + + C SAGR+ + H +C+ + CP
Sbjct: 21 NFGDTALSLKCLGSSAGRLIGSSHHNHKLCSDVSNCP 57
>At5g09670.2 68418.m01119 loricrin-related contains weak similarity
to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
Length = 546
Score = 26.2 bits (55), Expect = 7.5
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -2
Query: 179 SHRHGRRCSALSCTDRQD*FHCQEHRVTHSGSRRHELSQPPGIVSRPGSPPCRSRG 12
+H G+RC L CT + + ++H G RR E + +R S C G
Sbjct: 199 THGGGKRCEHLGCTKSAE--GKTDFCISHGGGRRCEFLEGCDKAARGRSGLCIKHG 252
>At5g09670.1 68418.m01118 loricrin-related contains weak similarity
to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
Length = 546
Score = 26.2 bits (55), Expect = 7.5
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -2
Query: 179 SHRHGRRCSALSCTDRQD*FHCQEHRVTHSGSRRHELSQPPGIVSRPGSPPCRSRG 12
+H G+RC L CT + + ++H G RR E + +R S C G
Sbjct: 199 THGGGKRCEHLGCTKSAE--GKTDFCISHGGGRRCEFLEGCDKAARGRSGLCIKHG 252
>At4g12460.1 68417.m01971 oxysterol-binding family protein similar
to SP|P22059 Oxysterol-binding protein 1 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 694
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 2 ESEHLENGMAESLDERRFQEAERARVSEILNES 100
+ HLENG E +E + + R R+S + ES
Sbjct: 613 DQRHLENGEYEKANEEKQRLERRQRMSRQIQES 645
>At3g22710.1 68416.m02865 F-box family protein contains F-box domain
Pfam:PF00646
Length = 326
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 32 ESLDERRFQEAERARVSEILNESRDAPDNEINLDDPCM 145
E E+ F +A + + +L E R PD + + +PC+
Sbjct: 40 ERFTEKHFSKAPKESMVLMLKEHRVCPDKRLVVWNPCL 77
>At1g48580.1 68414.m05432 expressed protein
Length = 454
Score = 26.2 bits (55), Expect = 7.5
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Frame = +2
Query: 41 DERRFQE-AERARVSEILNESRDAPDNEIN--LDDPCMKVHCSAGRVCEINEHGEAICNC 211
D + F E E E L ++ + PD E +DP + ++ G AI
Sbjct: 96 DPKSFNEHGEPIPTQEFLRKAAEEPDWEDKDFSEDPWVSTVDYIRSEGLLSNGGNAIGTP 155
Query: 212 IQECPYETDSWGKV 253
+ E DSWGKV
Sbjct: 156 VSEIKRRCDSWGKV 169
>At1g25580.1 68414.m03176 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to putative NAM protein (GP:21554371)
(Arabidopsis thaliana)
Length = 449
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 2 ESEH-LENGMAESLDERRFQEAER 70
E EH LENG E LD++ QE +R
Sbjct: 310 ELEHGLENGAKEMLDDKEEQEKDR 333
>At1g21170.1 68414.m02647 expressed protein
Length = 1090
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 47 RRFQEAERARVSEILNESRDAPDNEINLD 133
+R EAE AR + ESR AP NLD
Sbjct: 134 KRVNEAELARKVRDMRESRTAPSVTQNLD 162
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 14 LENGMAESLDERRFQEAERARVSEILNESRDAPDNE-INLDD 136
L + + + +D+ EA+RA +++ +++D P+NE N DD
Sbjct: 1295 LRSNLEKVVDQITHFEAKRANINQESLDAKDKPENEHHNKDD 1336
>At3g43520.1 68416.m04614 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 240
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 153 TAAPAVSVRSTSTGKLSATAFRSVHTKPTLGARCAQTSTR 272
TA+P SVR ++ AF S H + LGA ST+
Sbjct: 29 TASPIRSVRFQNSNGFHPLAFASGHRRLPLGAVVPSDSTK 68
>At3g15830.1 68416.m02003 phosphatidic acid phosphatase-related /
PAP2-related contains Pfam profile PF01569: PAP2
superfamily
Length = 296
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 5 SEHLENGMAESLDERRFQEAERARVSEILN 94
S H+ M SLD +R Q A V +ILN
Sbjct: 209 SGHVAGSMIASLDMKRMQRFRLAMVFDILN 238
>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
to floral homeotic protein HUA1 [Arabidopsis thaliana]
gi|16797661|gb|AAK01470
Length = 524
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 204 ATAFRSVHTKPTLGARCAQTSTRPGHRTARLY 299
AT+F T+PTLG A RPG Y
Sbjct: 398 ATSFYQTLTQPTLGVISATYPQRPGQSECDYY 429
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -2
Query: 95 HSGSRRHELSQPPGIVSRPGSPPCRSRGAP 6
HS H+ Q PG SRP P S AP
Sbjct: 427 HSQQADHDYPQQPGPGSRPNPPHPSSVSAP 456
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,547,671
Number of Sequences: 28952
Number of extensions: 174364
Number of successful extensions: 654
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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