Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_K20
(619 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 43 1e-04
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 42 4e-04
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 39 0.002
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 39 0.002
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 38 0.004
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 37 0.009
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 37 0.009
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 36 0.028
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 31 0.81
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 31 0.81
At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family pr... 30 1.1
At1g30220.1 68414.m03697 sugar transporter family protein simila... 29 1.9
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 29 3.3
At5g57000.1 68418.m07114 expressed protein similar to unknown pr... 28 4.3
At4g34350.1 68417.m04881 LytB family protein contains Pfam profi... 28 4.3
At1g79890.1 68414.m09334 helicase-related similar to CHL1 potent... 28 5.7
At4g20190.1 68417.m02952 hypothetical protein 27 7.5
At2g46530.2 68415.m05803 transcriptional factor B3 family protei... 27 7.5
At2g46530.1 68415.m05802 transcriptional factor B3 family protei... 27 7.5
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 27 10.0
At4g25390.2 68417.m03653 protein kinase family protein contains ... 27 10.0
At4g25390.1 68417.m03652 protein kinase family protein contains ... 27 10.0
At2g43330.1 68415.m05388 sugar transporter family protein simila... 27 10.0
At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containi... 27 10.0
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 43.2 bits (97), Expect = 1e-04
Identities = 43/160 (26%), Positives = 60/160 (37%)
Frame = +2
Query: 8 APIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHAD 187
A ++ P N P + DA WIQ G P K VLG G W+L + + S P
Sbjct: 223 AALFDPSNAGP--SGDAGTRSWIQAGLPAKKAVLGFPYYGYAWRLTNANSHSYYAP---T 277
Query: 188 EGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDNGEG 367
G P G + Y +I +++ NG S G Y + G
Sbjct: 278 TGAAISP----DGSIGYGQIRKFIVD---NGATTVYN-----STVVGDYCY-------AG 318
Query: 368 GFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDDFRGL 487
W+ Y+D + K Y K + L G + DD GL
Sbjct: 319 TNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGL 358
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 41.5 bits (93), Expect = 4e-04
Identities = 41/167 (24%), Positives = 66/167 (39%)
Frame = +2
Query: 8 APIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHAD 187
A +Y P + ++ D+ + W + G P K VLG G W L +D +++G
Sbjct: 202 ASLYLPTDG---RSGDSGVRDWTEAGLPAKKAVLGFPYYGWAWTL-ADPDVNGY------ 251
Query: 188 EGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDNGEG 367
+ GP G +SY ++ +++ NG KV+D G Y + G
Sbjct: 252 DANTTGPAISDDGEISYRQLQTWIVD---NG----ATKVHD-DMMVGDYCY-------AG 296
Query: 368 GFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDDFRGLCTGDKYP 508
W+ Y+ + K Y K K L G + DD L + P
Sbjct: 297 TTWIGYDSEKSIVTKVIYAKQKGLLGYFSWHVGGDDNSELSSAGSTP 343
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 39.1 bits (87), Expect = 0.002
Identities = 41/168 (24%), Positives = 69/168 (41%)
Frame = +2
Query: 8 APIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHAD 187
A ++ P N ++ D+ ++ W++ P K VLG S G W L+ D+E +G
Sbjct: 211 AALFDPSNPAG-RSGDSGLSKWLEAKLPAKKAVLGFSYCGWAWTLE-DAENNGY------ 262
Query: 188 EGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDNGEG 367
+ G G ++Y +I +I+ NG +DP+ G Y + G
Sbjct: 263 DAATDGAAISSDGSITYAKIRNYIID---NG----AATFHDPAV-IGFYCY-------VG 307
Query: 368 GFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDDFRGLCTGDKYPI 511
W+ Y+D + +K Y K K L G + D GL + +
Sbjct: 308 TTWIGYDDNQSIVSKVRYAKLKGLLGYFSWHVGADYNCGLSRAGSFSL 355
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 39.1 bits (87), Expect = 0.002
Identities = 36/136 (26%), Positives = 56/136 (41%)
Frame = +2
Query: 5 TAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHA 184
TA ++ N + + D+ + WI++G P K VLG S G W L +D + +G A
Sbjct: 214 TAGLHVSSNNEG-PSGDSGLKQWIKDGLPEKKAVLGFSYVGWAWTLQNDKD-TGYNAAAA 271
Query: 185 DEGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDNGE 364
++ G ++Y +I N+ + KV DP K G Y F
Sbjct: 272 GVAKSEDDVSE-DGSINYAQI-------NKFIRDEEAAKVYDP-KVVGHYCFAKK----- 317
Query: 365 GGFWVSYEDPDTAGNK 412
W+ YED + K
Sbjct: 318 --IWIGYEDTQSVEAK 331
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 38.3 bits (85), Expect = 0.004
Identities = 47/182 (25%), Positives = 69/182 (37%), Gaps = 2/182 (1%)
Frame = +2
Query: 8 APIYAPQN-RDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHA 184
A ++ P N + P D + WI+ G P K VLG G TW L S
Sbjct: 210 AALFDPSNPKGPC--GDYGLKEWIKAGLPAKKAVLGFPYVGWTWSLGS-----------G 256
Query: 185 DEGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDNGE 364
++ + T +G ++Y +I +++ R V D S G Y F
Sbjct: 257 NDAATSRVATSAEGSINYDQIKRLIVDHK-------ARPVFD-STVVGDYCF-------A 301
Query: 365 GGFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDDFRGLC-TGDKYPILRAAKYRL*T 541
G + Y+D + K Y K K L G + DD GL G + + + L T
Sbjct: 302 GTSLIGYDDHQSVVAKVKYAKQKGLLGYFSWHVGADDNFGLSRAGSSFCTYESLFFSLFT 361
Query: 542 FS 547
FS
Sbjct: 362 FS 363
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 37.1 bits (82), Expect = 0.009
Identities = 25/80 (31%), Positives = 34/80 (42%)
Frame = +2
Query: 8 APIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHAD 187
AP+Y P P + DA + W Q G P K VLG G W L +D++ H
Sbjct: 221 APLYDPITTGP--SGDAGVRAWTQAGLPAKKAVLGFPLYGYAWCL-TDAK------NHNY 271
Query: 188 EGGEAGPYTKVQGLLSYPEI 247
+GP G + Y +I
Sbjct: 272 YANSSGPAISPDGSIGYDQI 291
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 37.1 bits (82), Expect = 0.009
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 8 APIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSE 157
A +Y P + P D + +W++ G P K V G G +W LD D +
Sbjct: 191 AGLYDPSIKGPC--GDTGLKHWLKAGLPEKKAVFGFPYVGWSWTLDDDKD 238
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 35.5 bits (78), Expect = 0.028
Identities = 36/154 (23%), Positives = 54/154 (35%)
Frame = +2
Query: 47 NADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQG 226
+ D+ + WI G P K VLG G W L P H GP G
Sbjct: 125 SGDSGVKDWIDAGLPAEKAVLGFPYYGWAWTLAD-------PKNHGYYVDTTGPAISDDG 177
Query: 227 LLSYPEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDPDTAG 406
+SY ++ +++ V+D + G Y + G W+ Y+ ++
Sbjct: 178 EISYSQLKTWIVDNKAT-------TVHD-NIVIGDYCY-------AGTTWIGYDSEESIV 222
Query: 407 NKASYVKTKNLGGVSIMDLSMDDFRGLCTGDKYP 508
K Y K K L G + DD L + P
Sbjct: 223 TKVIYAKQKGLLGYFSWQVGGDDKSELSSAGSSP 256
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 30.7 bits (66), Expect = 0.81
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +2
Query: 83 GAPTHKL-VLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAKL 259
G+ KL G ST G +W D S+ GV I+A GGE Y K + L
Sbjct: 249 GSGAQKLEAQGNSTGGTSW--DDGSDYDGVTKIYASYGGEGIQYVKFDYVKGGVTKQGVL 306
Query: 260 INPNQNGKRPHLRKVNDPSK 319
Q+ + P +N P +
Sbjct: 307 HGKQQSRQNPREFVINHPDE 326
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 30.7 bits (66), Expect = 0.81
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +2
Query: 83 GAPTHKL-VLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAKL 259
G+ KL G ST G +W D S+ GV I+A GGE Y K + L
Sbjct: 249 GSGAQKLEAQGNSTGGTSW--DDGSDYDGVTKIYASYGGEGIQYVKFDYVKGGVTKQGVL 306
Query: 260 INPNQNGKRPHLRKVNDPSK 319
Q+ + P +N P +
Sbjct: 307 HGKQQSRQNPREFVINHPDE 326
>At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family
protein bHLH protein, Arabidopsis thaliana,
PATCHX:E255557
Length = 589
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +2
Query: 305 NDPSKRFGTYAFRLPDDNGEG--GFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDDF 478
N+ FG++AF L D GE G W+S + +G A+ V N G S +
Sbjct: 253 NNGGGEFGSWAFNLNPDQGENDPGLWISEPNGVDSGLVAAPV-MNNGGNDSTSNSDSQPI 311
Query: 479 RGLCTG 496
LC G
Sbjct: 312 SKLCNG 317
>At1g30220.1 68414.m03697 sugar transporter family protein similar
to SP|Q96QE2 Proton myo-inositol co-transporter (Hmit)
[Homo sapiens]; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 580
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 36 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 146
++Y +PT++ + GF R LSLV+A L+ GS I
Sbjct: 294 VMYYSPTIVQLAGFASNRTALLLSLVTAGLNAFGSII 330
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 28.7 bits (61), Expect = 3.3
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 1/135 (0%)
Frame = +2
Query: 44 QNADAAINYWIQNGA-PTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKV 220
++ ++ + W+ P K VLG G W L+ D+E +G A +G P
Sbjct: 231 RSGNSGLRKWLDEAKLPPKKAVLGFPYCGWAWTLE-DAENNGYDA--ATDGAAISP---- 283
Query: 221 QGLLSYPEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDPDT 400
G ++Y +I +++ NG +DP+ G Y + G W+ Y+D +
Sbjct: 284 DGSITYAKIRNYIVD---NGAATF----HDPAV-IGFYCY-------VGNTWIGYDDNQS 328
Query: 401 AGNKASYVKTKNLGG 445
K Y K L G
Sbjct: 329 IVYKVKYAKFTGLLG 343
>At5g57000.1 68418.m07114 expressed protein similar to unknown
protein (gb|AAF21159.1)
Length = 187
Score = 28.3 bits (60), Expect = 4.3
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -3
Query: 389 LRKKPRSHLHHYHQE 345
L++KP HLHH+H+E
Sbjct: 87 LKEKPPRHLHHHHKE 101
>At4g34350.1 68417.m04881 LytB family protein contains Pfam profile:
PF02401 LytB protein
Length = 466
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +2
Query: 101 LVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAK 256
LV+G + T L SE G+P D GP K+ L Y E+ K
Sbjct: 372 LVVGGWNSSNTSHLQEISEARGIPSYWIDSEKRIGPGNKIAYKLHYGELVEK 423
>At1g79890.1 68414.m09334 helicase-related similar to CHL1 potential
helicase protein (GI:2632247) [Homo sapiens]; similar to
helicase GB:AAB06962 [Homo sapiens]
Length = 882
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +2
Query: 317 KRFGTYAFRLPDDNGEGGFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDD 475
+ F L ++NG+G +S T+G Y+K L G + +D+
Sbjct: 504 RAFSDMLVALTNNNGDGRIIISRTSSSTSGQHGGYIKYVMLTGAKLFSEVVDE 556
>At4g20190.1 68417.m02952 hypothetical protein
Length = 389
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/88 (21%), Positives = 34/88 (38%)
Frame = -1
Query: 496 SSAKTTKIIHGKVHDGHTAKVLCFHVTSFVSGRVRIFVRNPEATFTIIIRKAEGIGPKTF 317
S+ +K I+ DG LC ++ F G+ R +++FT R ++
Sbjct: 195 SNTANSKSINS-FEDGFKCSALCLYLPGFSKGKPVRSSRKGDSSFT---RTTTMTSSQSM 250
Query: 316 ARIVDLTKMRTLSVLVGVNKFGANFWVA 233
AR + LS + +F W +
Sbjct: 251 ARTASIRDTAVLSARASLERFECGSWTS 278
>At2g46530.2 68415.m05803 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
domain
Length = 514
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 240 QKFAPNLLTPTKTESVLIFVRSTILANVLG-PMPSAFL 350
+ F+P+ LTPT T+ RS ++ + G P+ S+FL
Sbjct: 263 EPFSPSALTPTPTQQQSKSKRSRPISEITGSPVASSFL 300
>At2g46530.1 68415.m05802 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
domain
Length = 601
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 240 QKFAPNLLTPTKTESVLIFVRSTILANVLG-PMPSAFL 350
+ F+P+ LTPT T+ RS ++ + G P+ S+FL
Sbjct: 350 EPFSPSALTPTPTQQQSKSKRSRPISEITGSPVASSFL 387
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 263 NPNQNGKRPHLRKVNDPSKRFGTYA 337
NPN N +R + K D S FG+YA
Sbjct: 44 NPNPNFERSNSSKQCDDSSEFGSYA 68
>At4g25390.2 68417.m03653 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 497
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +2
Query: 263 NPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDPDTAGNKASYVKTKNLG 442
N + + +RP R+ + S R T +F + G+GGF V + + G + VK + G
Sbjct: 74 NASSSPRRPSPREFSYSSLRRATGSFSQANRLGQGGFGVVFRGTISGGENVA-VKVMDSG 132
Query: 443 GV 448
+
Sbjct: 133 SL 134
>At4g25390.1 68417.m03652 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 651
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +2
Query: 263 NPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDPDTAGNKASYVKTKNLG 442
N + + +RP R+ + S R T +F + G+GGF V + + G + VK + G
Sbjct: 74 NASSSPRRPSPREFSYSSLRRATGSFSQANRLGQGGFGVVFRGTISGGENVA-VKVMDSG 132
Query: 443 GV 448
+
Sbjct: 133 SL 134
>At2g43330.1 68415.m05388 sugar transporter family protein similar
to SP|Q96QE2 Proton myo-inositol co-transporter (Hmit)
[Homo sapiens], SP|Q01440 Membrane transporter D1
{Leishmania donovani}; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 509
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +3
Query: 12 RFTHRRTAILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 146
+FT T ++Y +PT++ + GF +L LSL+ A ++ G+ +
Sbjct: 287 QFTGINT-VMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVV 330
>At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 501
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 340 EGIGPKTFARIVDLTKMRTLSVLVGVNKFG-ANFW 239
EGIG K R+++L R+ ++++ N+F A W
Sbjct: 401 EGIGEKVKKRLIELEPKRSGNLVIVANRFAEARMW 435
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,759
Number of Sequences: 28952
Number of extensions: 348030
Number of successful extensions: 947
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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