Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_K18
(378 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 183 7e-48
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 29 0.24
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 1.3
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 2.3
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 25 5.2
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 25 5.2
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 5.2
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 24 6.9
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 24 6.9
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 24 9.1
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 24 9.1
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 183 bits (446), Expect = 7e-48
Identities = 85/103 (82%), Positives = 98/103 (95%)
Frame = +3
Query: 9 SPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEGS 188
S +HRIRITLTSRNVR+LEKVCSDL+N AK ++LRVKGPVR+PTK+L+ITTRKTP GEGS
Sbjct: 15 STVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRKTPNGEGS 74
Query: 189 KTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 317
KTW+ ++MRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIA
Sbjct: 75 KTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 29.1 bits (62), Expect = 0.24
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 105 KLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 257
K+ +KGP +P KV T ++P S + + F+ H R+I L+S + +
Sbjct: 92 KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.6 bits (56), Expect = 1.3
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +3
Query: 105 KLRVKGPVRMPTKV---LRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITS 275
K R G + P V LR KT G G + ++ R+ DLH E +I +
Sbjct: 785 KSRENGTIPRPLYVISHLRPLLHKTSLGVGDILLE-VNGKMITRLSDLHE-FETESEIKA 842
Query: 276 INIEPGVEVEVTI 314
+ + G+E+E+TI
Sbjct: 843 VILRDGIEMEITI 855
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 210 MRIHKRVIDLHSPSEIVKQITSINIEPGV 296
+R+H+R I L + S+ ++ + NIE G+
Sbjct: 406 LRVHERAIKLRTLSDSIRADVAENIEMGI 434
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 24.6 bits (51), Expect = 5.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 170 CFTCCDAENLGRHSDWTLYTEF 105
C+ C A+NL HS +L+ F
Sbjct: 469 CYLCLYAQNLNSHSSQSLFELF 490
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 5.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 221 VDAHLESVPSLGTLTARCFTCCDAENLG 138
+ A L+++ SLG TC AEN G
Sbjct: 52 IQADLKTMTSLGVYGMSAITCLVAENAG 79
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 5.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 162 RKTPCGEGSKTWDRFQM 212
R +P GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 24.2 bits (50), Expect = 6.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 231 IDLHSPSEIVKQITSINIEPGVEVEVT 311
ID SPS I ++ S N+E G VT
Sbjct: 545 IDGESPSSISSRLPSSNLEQGSSSSVT 571
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 24.2 bits (50), Expect = 6.9
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = -3
Query: 184 PSPQGVLRVVMRRTLVGIRTGPFTR 110
P PQ ++ + L G+ PF R
Sbjct: 176 PQPQAIMHLETSSNLTGVTVNPFNR 200
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 23.8 bits (49), Expect = 9.1
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +3
Query: 159 TRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIE 287
T++ PC S+ + + + +R++D + + Q+TS+ IE
Sbjct: 150 TKRLPCSCLSEIKNIDDLGLKQRILDSYKKQKPSGQLTSMQIE 192
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 23.8 bits (49), Expect = 9.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 60 LEKVCSDLINGAKKQKLRVKGP 125
LE +C+D I + KL++KGP
Sbjct: 262 LESLCTDDILFEENIKLKIKGP 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,624,307
Number of Sequences: 5004
Number of extensions: 31683
Number of successful extensions: 86
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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