Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_K18
(378 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 169 5e-43
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 169 8e-43
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 169 8e-43
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 54 5e-08
06_01_0379 - 2723365-2723490,2724558-2724647,2724813-2725046,272... 30 0.69
01_05_0790 + 25253363-25254136,25259037-25259897 28 2.1
02_05_0551 + 29907768-29907909,29907995-29909280 27 6.5
11_06_0526 - 24585161-24587119 26 8.6
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018 26 8.6
09_04_0753 + 19942397-19942805,19943457-19943866,19944252-19945121 26 8.6
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773... 26 8.6
04_04_0717 - 27525117-27525248,27525384-27525549,27525629-275258... 26 8.6
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 169 bits (412), Expect = 5e-43
Identities = 76/101 (75%), Positives = 92/101 (91%)
Frame = +3
Query: 18 HRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTW 197
HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMPTKVL ITTRK+PCGEG+ TW
Sbjct: 27 HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTW 86
Query: 198 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 320
DRF+MR+HKRVIDL S +++VKQITSI IEPGVEVEVTI+D
Sbjct: 87 DRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 169 bits (410), Expect = 8e-43
Identities = 77/102 (75%), Positives = 93/102 (91%)
Frame = +3
Query: 15 IHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEGSKT 194
++RIRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVR+PTKVL ITTRK+PCGEG+ T
Sbjct: 28 LNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNT 87
Query: 195 WDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 320
WDRF+ RIHKRVIDL S ++VKQITSI IEPGVEVEVTIAD
Sbjct: 88 WDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIAD 129
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 169 bits (410), Expect = 8e-43
Identities = 77/102 (75%), Positives = 93/102 (91%)
Frame = +3
Query: 15 IHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEGSKT 194
++RIRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVR+PTKVL ITTRK+PCGEG+ T
Sbjct: 25 LNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNT 84
Query: 195 WDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 320
WDRF+ RIHKRVIDL S ++VKQITSI IEPGVEVEVTIAD
Sbjct: 85 WDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIAD 126
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 53.6 bits (123), Expect = 5e-08
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Frame = +3
Query: 6 ISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEG 185
++P +IRI L S V +E C +I AK + GPV +PTK +P
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388
Query: 186 SKTWDRFQMRIHKRVIDLHSP-SEIVKQITSINIEPGVEVEVTI 314
+ F++R H+R+ID+ P ++ + + + + GV+VEV +
Sbjct: 389 DSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431
>06_01_0379 -
2723365-2723490,2724558-2724647,2724813-2725046,
2725174-2725470
Length = 248
Score = 29.9 bits (64), Expect = 0.69
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 204 ICPKSWNPHRKVFYV-L*CGEPWSAFGLDPLHG 109
+CP W+ HR+ F++ + C P++ G L+G
Sbjct: 183 VCPAYWSAHRRWFFMSMICLNPFTCIGRSKLNG 215
>01_05_0790 + 25253363-25254136,25259037-25259897
Length = 544
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 133 CRPRFSASQHVKHLAVRVPRLGTDSRCASTSV 228
C P SA+ +KH A++ LGTD+ A +V
Sbjct: 211 CGPGGSAAPALKHKALQAEALGTDNAMADVAV 242
>02_05_0551 + 29907768-29907909,29907995-29909280
Length = 475
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +3
Query: 57 SLEKVCSDLINGAKKQKLRVKG--PVRMPTKVLRITTRKTPCGEGSK 191
++ C+D + G LRV P + VLR+T R PC K
Sbjct: 35 AVSSTCADELPGRDWDSLRVSAASPRNGTSAVLRLTHRHGPCAPAGK 81
>11_06_0526 - 24585161-24587119
Length = 652
Score = 26.2 bits (55), Expect = 8.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 218 DAHLESVPSLGTLTARCFTC 159
D H++ VP + L+ R FTC
Sbjct: 528 DRHVDEVPDIPALSRRSFTC 547
>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
Length = 1040
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 164 TCCDAENLGRHSDWTLYTEFLFLGSID 84
TCC NL ++ L EF+ GS+D
Sbjct: 802 TCCSCPNLNQNDFKALVFEFMPYGSLD 828
>09_04_0753 + 19942397-19942805,19943457-19943866,19944252-19945121
Length = 562
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 356 IQNKFIWQLCLCVGDGDFHFYTWLDINRGD 267
+ NK +W CLC+ F T++ + R D
Sbjct: 465 VMNKLMWMACLCI-SAAFIALTYVVVGRDD 493
>06_03_0095 -
16575938-16576585,16577028-16577219,16577294-16577392,
16577496-16577618,16577717-16577929,16578143-16578251,
16578339-16578427,16578604-16578880,16578974-16579084,
16579160-16580508,16581218-16581631
Length = 1207
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 317 GDGDFHFYTWLDINRGDLL 261
GDGDF W DI GD++
Sbjct: 152 GDGDFEEKKWKDIKVGDVI 170
>04_04_0717 -
27525117-27525248,27525384-27525549,27525629-27525831,
27525911-27526048,27526642-27526725,27526864-27526950,
27527048-27527120,27527169-27527432,27527692-27527768,
27527886-27527957,27528049-27528209,27528238-27528484,
27528588-27528707,27528846-27528929,27529205-27529341,
27529689-27529856,27530093-27530317,27530865-27530952,
27531033-27531194,27532797-27532919
Length = 936
Score = 26.2 bits (55), Expect = 8.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 98 ETKTPCKGSSPNADQGSPHHN 160
++++ CK SPN+ GS H+N
Sbjct: 101 KSRSFCKSGSPNSSPGSGHNN 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,101,267
Number of Sequences: 37544
Number of extensions: 231427
Number of successful extensions: 618
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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