Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K18
         (378 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)             165   1e-41
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   4.5  
SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10)                   26   8.8  
SB_35872| Best HMM Match : NTR (HMM E-Value=3.6e-06)                   26   8.8  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score =  165 bits (401), Expect = 1e-41
 Identities = 78/95 (82%), Positives = 88/95 (92%), Gaps = 2/95 (2%)
 Frame = +3

Query: 45  RNVRSLEKV--CSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRI 218
           + VR+  KV  C+DLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKTWDR++MRI
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65

Query: 219 HKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 323
           HKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 66  HKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100


>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 24.6 bits (51), Expect(2) = 4.5
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +1

Query: 7   SHRSIVSGSR*R-HAMYAHWRRSALTSSMEPRNKNSV*RVQSECRPRFSASQHVKHLAVR 183
           S RS   GS  R     +H RRS+    +E R++ S  R + + R R SAS+       R
Sbjct: 363 SRRSSSRGSVPRPRRSTSHDRRSSSRDRLEMRDRRSASRDRLQMRNRRSASRD------R 416

Query: 184 VPRLGTDSRCASTS 225
           +P  G   R  S S
Sbjct: 417 IPSSGGRRRSPSPS 430



 Score = 21.0 bits (42), Expect(2) = 4.5
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +1

Query: 304 KSPSPTHRHNCQ 339
           +SPSP+ +++CQ
Sbjct: 425 RSPSPSEQNSCQ 436


>SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 129 RMPTKVLRITT-RKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 257
           R+PT    + T +K PC     TW R +    KR + +H P+ +
Sbjct: 22  RVPTAFPSVATGKKYPCQRKKVTWSR-KKNPFKRRVPVHVPTSL 64


>SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10)
          Length = 548

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 95  QETKTPCKGSSPNADQGSPHHNT 163
           QE+K  CK SSP   + +P+H T
Sbjct: 13  QESKNYCKISSPYRHKMAPYHRT 35


>SB_35872| Best HMM Match : NTR (HMM E-Value=3.6e-06)
          Length = 598

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 185 TLTARCFTCCDAENLGRHSDWTLYTEFLFLGSIDEVRADLLQ*AYIA 45
           TLT +C  C ++EN G H      ++ + L  I ++R++  +  Y A
Sbjct: 117 TLTPKCGACRESENPGAH---FCISQHVILARITKIRSNKQRTVYYA 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,796,707
Number of Sequences: 59808
Number of extensions: 257841
Number of successful extensions: 683
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)