Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K18
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   175   7e-45
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    28   1.9  
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr...    28   2.5  
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ...    28   2.5  
AC006620-1|AAF39780.1|  754|Caenorhabditis elegans Hypothetical ...    28   2.5  
Z46934-9|CAD18881.1|  204|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z36719-3|CAA85314.1|  135|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    27   5.9  
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    27   5.9  
AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical ...    27   5.9  
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    26   7.8  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    26   7.8  
U41021-7|AAL02487.1|  680|Caenorhabditis elegans Hypothetical pr...    26   7.8  
U41021-6|AAL02488.1|  713|Caenorhabditis elegans Hypothetical pr...    26   7.8  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    26   7.8  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  175 bits (427), Expect = 7e-45
 Identities = 78/101 (77%), Positives = 95/101 (94%)
 Frame = +3

Query: 18  HRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTW 197
           HRIR+TLTS+NV+ LEKVC+ LI+GAK + L VKGP+RMPTKVLRITTRKTPCGEGSKTW
Sbjct: 17  HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76

Query: 198 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 320
           DRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV++EVT AD
Sbjct: 77  DRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVTRAD 117


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 60  LEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGE 182
           +E V +  + G KK+  + K   + PTK    +T++ P  E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399


>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical protein
            F55G11.9 protein.
          Length = 1431

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 340  FGSCAYASAMVTSTSTPGSILIEVICFT 257
            F S  Y +A + +T T GS+L+ V C T
Sbjct: 962  FVSLVYLTASLINTPTKGSLLLYVFCLT 989


>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
            protein Y79H2A.3a protein.
          Length = 2129

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 189  WNPHRKVFYVL*CGEPWSAFGLDPLHGVFV 100
            W  + + FY    G+PWS+ G  P+ G  V
Sbjct: 1447 WPGYEEHFYAKNTGKPWSSGGFKPIAGAKV 1476


>AC006620-1|AAF39780.1|  754|Caenorhabditis elegans Hypothetical
           protein C51G7.3 protein.
          Length = 754

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 189 WNPHRKVFYVL*CGEPWSAFGLDPLHGVFV 100
           W  + + FY    G+PWS+ G  P+ G  V
Sbjct: 72  WPGYEEHFYAKNTGKPWSSGGFKPIAGAKV 101


>Z46934-9|CAD18881.1|  204|Caenorhabditis elegans Hypothetical
           protein ZK1320.11 protein.
          Length = 204

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 286 SILIEVICFTISEGECRSITRLWMR 212
           S L+EVICF +S  +   +  +WM+
Sbjct: 98  SSLMEVICFGLSSKQAVQVIDIWMK 122


>Z36719-3|CAA85314.1|  135|Caenorhabditis elegans Hypothetical
           protein C06C3.7 protein.
          Length = 135

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +3

Query: 84  INGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWD-RFQMRIHKRVIDLHSPSEIV 260
           I+G K+   R+K    M  K ++I   +TP  E  K    R + RI KR  ++H  +   
Sbjct: 50  IDGQKENPKRIKMSQHMTAKEVKIPLLRTPDEEARKIEKLRREARI-KRSKEVHYDAAEQ 108

Query: 261 KQITSINIEPGVEVE 305
           +QI  +N E  V++E
Sbjct: 109 QQI-MMNYEWTVQME 122


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 164  TCCDAENLGRHSDWTLYT 111
            TCCD E  G  +DW  +T
Sbjct: 1195 TCCDPEKTGLWNDWGAWT 1212


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
            protein F28B3.1 protein.
          Length = 1539

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 9    SPIHRIRITLTSRNVRSLEKVCSDLINGAKK 101
            SP HRI   +TS+N       CS L+  A++
Sbjct: 949  SPDHRILTLVTSKNAEQDTATCSTLLKRAER 979


>AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical
           protein H12I13.1 protein.
          Length = 592

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 45  RNVRSLEKVC-SDLINGAKKQKLRVKGPVRMPTKVLRITTRKT 170
           R+ +S  KVC + L  GAKK++        +  K+L IT  KT
Sbjct: 364 RDNKSSNKVCRTSLSGGAKKKRKERNARSEVGDKILGITETKT 406


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
            K08F8.6 protein.
          Length = 2862

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = +3

Query: 102  QKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSI 278
            QK  VK  ++   + L++TT+K    +G+K      +   K+ +D     + +K++ ++
Sbjct: 855  QKQIVKRSLKRAIRKLKLTTKKDSQSKGTKQQKLVLLSYKKKKVDEKKFQQYLKEVENV 913


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = +3

Query: 102  QKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSI 278
            QK  VK  ++   + L++TT+K    +G+K      +   K+ +D     + +K++ ++
Sbjct: 855  QKQIVKRSLKRAIRKLKLTTKKDSQSKGTKQQKLVLLSYKKKKVDEKKFQQYLKEVENV 913


>U41021-7|AAL02487.1|  680|Caenorhabditis elegans Hypothetical
           protein F14D12.1a protein.
          Length = 680

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 42  SRNVRSLEKVCSDLINGAKK-QKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRI 218
           S+   +L++  S  I+     Q  R    VR+PT++L   +  +  G   K+   F+ ++
Sbjct: 590 SQRTLTLQQQSSSSIDSLNSTQTTRTTSSVRLPTRILVNQSSTSSEGSSGKSQHYFESKV 649

Query: 219 HKRVIDLHSPSE 254
             +      PS+
Sbjct: 650 GPKTSSTSHPSD 661


>U41021-6|AAL02488.1|  713|Caenorhabditis elegans Hypothetical
           protein F14D12.1b protein.
          Length = 713

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 42  SRNVRSLEKVCSDLINGAKK-QKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRI 218
           S+   +L++  S  I+     Q  R    VR+PT++L   +  +  G   K+   F+ ++
Sbjct: 590 SQRTLTLQQQSSSSIDSLNSTQTTRTTSSVRLPTRILVNQSSTSSEGSSGKSQHYFESKV 649

Query: 219 HKRVIDLHSPSE 254
             +      PS+
Sbjct: 650 GPKTSSTSHPSD 661


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
            subunit Med13 protein.
          Length = 2862

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = +3

Query: 102  QKLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSI 278
            QK  VK  ++   + L++TT+K    +G+K      +   K+ +D     + +K++ ++
Sbjct: 855  QKQIVKRSLKRAIRKLKLTTKKDSQSKGTKQQKLVLLSYKKKKVDEKKFQQYLKEVENV 913


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,207,745
Number of Sequences: 27780
Number of extensions: 187742
Number of successful extensions: 510
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)