Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K17
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0105 - 14828097-14828226,14828371-14828547,14829690-148297...    28   6.2  
03_02_0045 - 5251234-5251305,5251362-5251419,5252256-5252539,525...    27   8.2  

>10_08_0105 -
           14828097-14828226,14828371-14828547,14829690-14829739,
           14829841-14829909,14829976-14830074,14830148-14830226,
           14830587-14830687,14830794-14830862,14831019-14831059,
           14831313-14831663,14831676-14832511,14832674-14832777,
           14833587-14834003,14836108-14836491
          Length = 968

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 278 IYGVSGNRIHSKKVPELVSVQRGYYELGLEKIKV 177
           I+G+SG      K+P L  +Q    +LG E I V
Sbjct: 146 IFGLSGESARQGKMPSLAELQTSIGDLGFEVIVV 179


>03_02_0045 -
          5251234-5251305,5251362-5251419,5252256-5252539,
          5252836-5253019,5253564-5253814,5253921-5254024,
          5254143-5254281
          Length = 363

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +1

Query: 4  SCISQTPPPNPSAQVPP 54
          S  SQ PPP PSA  PP
Sbjct: 28 SAASQPPPPPPSAATPP 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,265,225
Number of Sequences: 37544
Number of extensions: 274459
Number of successful extensions: 743
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)