Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_K17
(578 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_55637| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_58198| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012) 28 6.3
SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22) 27 8.4
SB_51188| Best HMM Match : RVT_1 (HMM E-Value=4.5e-24) 27 8.4
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0) 27 8.4
SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023) 27 8.4
SB_1433| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_45895| Best HMM Match : RVT_1 (HMM E-Value=0.00031) 27 8.4
SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05) 27 8.4
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05) 27 8.4
SB_27722| Best HMM Match : RVT_1 (HMM E-Value=0.00011) 27 8.4
SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37) 27 8.4
>SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +2
Query: 89 LRSERRVTVQTAHIMHGIKYPGDVTDPCLTPLSSLNPIRSTPFALTRALE 238
L + R + + H IK P DPC + P+ PF+ +A E
Sbjct: 316 LNNTERRSARVRHFRDPIKVPSFAVDPCAVLMIYKQPLGRIPFSCQQARE 365
>SB_55637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 180 GVRQGSVTSPGYLMPCIIWAVCTVTL 103
GVR+G VTSPGY + + CT+ +
Sbjct: 39 GVREGEVTSPGYPLDYGNYRNCTMVI 64
>SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 362 GQKVY**FVELERAYDIMVKNKL*AKSSIYGVSGN 258
G + Y F++L +A+D + +L K S YG+SGN
Sbjct: 271 GLQSYIVFLDLAKAFDSVSHQRLLWKLSRYGISGN 305
>SB_58198| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
Length = 816
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 338 VELERAYDIMVKNKL*AKSSIYGVS 264
++L +A+D + +N L AK S YGVS
Sbjct: 550 IDLSKAFDSICRNLLLAKLSAYGVS 574
>SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22)
Length = 726
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 341 FVELERAYDIMVKNKL*AKSSIYGVSGN 258
F++ +A+D + ++KL AK G+SGN
Sbjct: 469 FIDFRKAFDSIPRDKLFAKIQQAGISGN 496
>SB_51188| Best HMM Match : RVT_1 (HMM E-Value=4.5e-24)
Length = 505
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 341 FVELERAYDIMVKNKL*AKSSIYGVSGN 258
F++ +A+D + ++KL AK G+SGN
Sbjct: 55 FIDFRKAFDSIPRDKLFAKIQQSGISGN 82
>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1858
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 341 FVELERAYDIMVKNKL*AKSSIYGVSGN 258
F++ +A+D + ++KL AK G+SGN
Sbjct: 1421 FIDFRKAFDSIPRDKLFAKIQQSGISGN 1448
>SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 341 FVELERAYDIMVKNKL*AKSSIYGVSGN 258
F++ +A+D + ++KL AK G+SGN
Sbjct: 378 FIDFRKAFDSIPRDKLFAKIQQAGISGN 405
>SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)
Length = 836
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 341 FVELERAYDIMVKNKL*AKSSIYGVSGN 258
F++ +A+D + ++KL AK G+SGN
Sbjct: 778 FIDFRKAFDSIPRDKLFAKIQQAGISGN 805
>SB_1433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1096
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 155 DVTDPCLTPLSSLNPIRSTPFALTR-ALELS*NVSCY 262
DVT P PL++ + PF R AL S N+ CY
Sbjct: 861 DVTPPARPPLAAAQQTKDLPFRRQRFALPDSANLGCY 897
>SB_45895| Best HMM Match : RVT_1 (HMM E-Value=0.00031)
Length = 313
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 341 FVELERAYDIMVKNKL*AKSSIYGVSGN 258
F++ +A+D + ++KL AK G+SGN
Sbjct: 175 FIDFRKAFDSIPRDKLFAKIQQAGISGN 202
>SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05)
Length = 809
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 155 DVTDPCLTPLSSLNPIRSTPFALTR-ALELS*NVSCY 262
DVT P PL++ + PF R AL S N+ CY
Sbjct: 301 DVTPPARPPLAAAQQTKDLPFRRQRFALPDSANLGCY 337
>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1317
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 341 FVELERAYDIMVKNKL*AKSSIYGVSGN 258
F++ +A+D + ++KL AK G+SGN
Sbjct: 1141 FIDFRKAFDSIPRDKLFAKIQQAGISGN 1168
>SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05)
Length = 983
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 155 DVTDPCLTPLSSLNPIRSTPFALTR-ALELS*NVSCY 262
DVT P PL++ + PF R AL S N+ CY
Sbjct: 475 DVTPPARPPLAAAQQTKDLPFRRQRFALPDSANLGCY 511
>SB_27722| Best HMM Match : RVT_1 (HMM E-Value=0.00011)
Length = 315
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 341 FVELERAYDIMVKNKL*AKSSIYGVSGN 258
F++ +A+D + ++KL AK G+SGN
Sbjct: 177 FIDFRKAFDSIPRDKLFAKIQQAGISGN 204
>SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 341 FVELERAYDIMVKNKL*AKSSIYGVSGN 258
F++ +A+D + ++KL AK G+SGN
Sbjct: 404 FIDFRKAFDSIPRDKLFAKIQQAGISGN 431
>SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37)
Length = 458
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 341 FVELERAYDIMVKNKL*AKSSIYGVSGN 258
F++ +A+D + ++KL AK G+SGN
Sbjct: 177 FIDFRKAFDSIPRDKLFAKIQQAGISGN 204
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,439,290
Number of Sequences: 59808
Number of extensions: 299654
Number of successful extensions: 823
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -