Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K17
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF314195-1|AAK01173.1|  820|Caenorhabditis elegans OSM-5 protein.      29   2.4  
AC006761-7|AAF60551.2|  820|Caenorhabditis elegans Osmotic avoid...    29   2.4  
AC090999-12|ABD63206.1|  257|Caenorhabditis elegans Hypothetical...    27   7.3  

>AF314195-1|AAK01173.1|  820|Caenorhabditis elegans OSM-5 protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -1

Query: 335 ELERAYDIMVKNKL*AKSSIYGVSGNRIHSKKVPELVSVQRGYYELGLEKIKVLDKD 165
           E    Y+I+V+NK+   S    V+   IH +K  E     + YY + L+++  + KD
Sbjct: 204 EALNTYEIIVRNKMFPNSGRLKVNIGNIHFRK-REFTKALK-YYRMALDQVPSIQKD 258


>AC006761-7|AAF60551.2|  820|Caenorhabditis elegans Osmotic
           avoidance abnormal protein5 protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -1

Query: 335 ELERAYDIMVKNKL*AKSSIYGVSGNRIHSKKVPELVSVQRGYYELGLEKIKVLDKD 165
           E    Y+I+V+NK+   S    V+   IH +K  E     + YY + L+++  + KD
Sbjct: 204 EALNTYEIIVRNKMFPNSGRLKVNIGNIHFRK-REFTKALK-YYRMALDQVPSIQKD 258


>AC090999-12|ABD63206.1|  257|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.23 protein.
          Length = 257

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 311 LYHKPFLILRIISRPFDHKLKAEALV 388
           L+ K   ILRII R  DH L+ EA +
Sbjct: 133 LFAKLINILRIIERELDHNLECEASI 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,179,969
Number of Sequences: 27780
Number of extensions: 231933
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)