Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K17
         (578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10260.3 68416.m01230 reticulon family protein weak similarit...    27   6.8  
At3g10260.2 68416.m01229 reticulon family protein weak similarit...    27   6.8  
At3g10260.1 68416.m01228 reticulon family protein weak similarit...    27   6.8  

>At3g10260.3 68416.m01230 reticulon family protein weak similarity
           to Nogo-C protein [Rattus norvegicus] GI:6822251;
           contains Pfam profile PF02453: Reticulon; identical to
           cDNA GI:32331854
          Length = 267

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -1

Query: 260 NRIHSKKVPELVSVQRGYYELGLEKIKVLDKDLLHLQDT*CHALYGRFVLS 108
           NR  S+ VP LV  +  + E+G+   K +++ LL LQD  C     +F+++
Sbjct: 140 NRSQSR-VPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMA 189


>At3g10260.2 68416.m01229 reticulon family protein weak similarity
           to Nogo-C protein [Rattus norvegicus] GI:6822251;
           contains Pfam profile PF02453: Reticulon; identical to
           cDNA GI:32331854
          Length = 247

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -1

Query: 260 NRIHSKKVPELVSVQRGYYELGLEKIKVLDKDLLHLQDT*CHALYGRFVLS 108
           NR  S+ VP LV  +  + E+G+   K +++ LL LQD  C     +F+++
Sbjct: 120 NRSQSR-VPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMA 169


>At3g10260.1 68416.m01228 reticulon family protein weak similarity
           to Nogo-C protein [Rattus norvegicus] GI:6822251;
           contains Pfam profile PF02453: Reticulon; identical to
           cDNA GI:32331854
          Length = 247

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -1

Query: 260 NRIHSKKVPELVSVQRGYYELGLEKIKVLDKDLLHLQDT*CHALYGRFVLS 108
           NR  S+ VP LV  +  + E+G+   K +++ LL LQD  C     +F+++
Sbjct: 120 NRSQSR-VPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMA 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,640,552
Number of Sequences: 28952
Number of extensions: 223641
Number of successful extensions: 516
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)