Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K16
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    31   0.12 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   4.5  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   4.5  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    25   7.9  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   7.9  

>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 108 QRSGSVRTILTMIGSTSLDSFTISERLWPSTRSRNGAWSVTH 233
           Q S    T    + S  + S T+S   WP+T   +GAWS T+
Sbjct: 40  QNSERFSTASRSVKSGLISSSTVSAWTWPATLLSSGAWSYTY 81


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 193  GHNLSEIVNESNEVEPIIVRMVLTDPLRCLESVHNVRQVS 74
            G++LSE +N  N +   + ++   DP+R    +H  +  S
Sbjct: 936  GNHLSEKLNSDNHIPKALQKLDSADPIRKPSLLHTSKSYS 975


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -2

Query: 217 APLRLLVEGHNLSEIVNESNEVEPIIVRMVLTDPLRCL--ESVHNV 86
           A LR  V     S ++NE+NE + I+  ++L+  LR L  E+  N+
Sbjct: 666 ARLRRSVSNKEDSSLINEANEEKEIVTNLLLS-ALRALISENAENI 710


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 521 RRLLLEGVCNHHQRATGRTNEILSCKD 441
           +RL++EG   ++ +  G  N+ L+C+D
Sbjct: 555 QRLIIEGKYTYYIKRQGTQNKQLNCRD 581


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 488 GDYKHLLKEGDEEIKKAVLEFN 553
           G+Y+HL    + E+K+ + EFN
Sbjct: 786 GNYEHLFVSTNSELKQQLSEFN 807


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,228
Number of Sequences: 5004
Number of extensions: 51652
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)