Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K16
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19406| Best HMM Match : DUF706 (HMM E-Value=2.8e-31)               149   1e-36
SB_47217| Best HMM Match : Picorna_P3A (HMM E-Value=5.7)               29   2.7  
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              24   4.2  
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)           28   6.3  
SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)     27   8.3  
SB_772| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.3  

>SB_19406| Best HMM Match : DUF706 (HMM E-Value=2.8e-31)
          Length = 203

 Score =  149 bits (362), Expect = 1e-36
 Identities = 63/102 (61%), Positives = 82/102 (80%)
 Frame = +2

Query: 17  TIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIREDHPDDDWFHLIGLIHDLGKVMAF 196
           T+ +A+  L+ LVDESDPDT+LPN  HAFQTAERIR DHPD DWF L+GL+HD+GKV+A 
Sbjct: 103 TVMEAVFMLDALVDESDPDTDLPNSAHAFQTAERIRADHPDKDWFQLVGLLHDMGKVLAL 162

Query: 197 YEEPQWCVVGDTFAVGCKWGKSIVYGDDSFKDNPDTYNPKYN 322
           + +PQWCVVGDTF VGC++    V+  ++F+DNPDT  P+Y+
Sbjct: 163 WGDPQWCVVGDTFPVGCQFSNKNVF-PETFEDNPDTKVPEYS 203


>SB_47217| Best HMM Match : Picorna_P3A (HMM E-Value=5.7)
          Length = 393

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 394 PIQGFGAQQIKVPQKRSLHDKISFVLPV 477
           P +GFG + I+  +KR  H K+S++ P+
Sbjct: 191 PWKGFGQESIESRRKRVYHGKVSYLKPL 218


>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 23.8 bits (49), Expect(2) = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 269 YGDDSFKDNPDTYNPKYNTEY 331
           Y +D   +  + YN +YNTEY
Sbjct: 264 YNNDYNTEYNNEYNTEYNTEY 284



 Score = 23.8 bits (49), Expect(2) = 5.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 269 YGDDSFKDNPDTYNPKYNTEY 331
           Y  D   D    YN +YNTEY
Sbjct: 413 YNTDYNTDYNTEYNTEYNTEY 433



 Score = 23.0 bits (47), Expect(2) = 4.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 305 YNPKYNTEYGMYEPNCGLE 361
           YN +YNTEY  Y      E
Sbjct: 280 YNTEYNTEYTEYNTEYNTE 298



 Score = 22.6 bits (46), Expect(2) = 5.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 305 YNPKYNTEYGMY 340
           YN +YNTEY  Y
Sbjct: 464 YNTEYNTEYTEY 475


>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
          Length = 506

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 156 SLDSFTISERLWPSTRSRNGA--WSVTHSPS 242
           S +SFTI+  LWPS+   N    W++  SP+
Sbjct: 397 SNNSFTITSPLWPSSPPSNTTCNWAIESSPN 427


>SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)
          Length = 210

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 11  KSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIREDHPDDD 145
           +S I   L K+ + +D+   + +LP +VH     E IR   P  D
Sbjct: 155 QSQIDSTLEKVGEKMDKYAKEADLPRLVHGSCLVEWIRHSVPKGD 199


>SB_772| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 305 YNPK-YNTEYGMYEPNCGLENLMVSWGHDEYLYRVLVHNKSKFPKKG 442
           Y P    +E+  ++    L N +V+   D Y YR  ++N  KF K+G
Sbjct: 35  YTPSDEGSEHIEWQIRVELNNRVVTLQTDSYPYRAYINNLLKFTKEG 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,419,696
Number of Sequences: 59808
Number of extensions: 408535
Number of successful extensions: 1292
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)