Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K15
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.39 
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    29   0.68 
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    27   1.6  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    27   2.1  
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    26   3.6  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   3.6  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   4.8  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    26   4.8  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   8.3  

>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 391 FITVSNVYFISQFEINSFNRSYFLI*VSEYCFSYVV 284
           F+  S    IS  ++N   R Y+ I    YCF Y++
Sbjct: 4   FVFESLCAMISTLKVNKIERGYWFIQCLRYCFIYII 39


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 130 ELIISILEYSLWVDVTGQCQGREGKYGYYNLHV 32
           +L  + L+ ++WV VT   +   G YGY  LH+
Sbjct: 212 DLYSNNLKDAVWVAVTNYMKNLVGNYGYTELHI 244


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
 Frame = +2

Query: 113 NGNDQFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGESHDELLKAI------- 271
           N N Q  A    + + KN   S++    S     + L IAS   +H+ +   I       
Sbjct: 59  NANIQLLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEW 118

Query: 272 -DFPNDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNEL 394
            +    +   ++  D+ +K+R +  VDL+   K      NEL
Sbjct: 119 AEIMKKDPNMSLMQDICEKIRKLDIVDLRAPKKPEKEAMNEL 160


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 4   ASEKHESHRQHEDYNNHI 57
           ++ +H SHR+HE Y  H+
Sbjct: 145 SNHRHGSHRRHEPYRTHL 162


>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 442 HFRIKHISGHNSKLII*FI 386
           HF + H+ GH SKL   F+
Sbjct: 72  HFHVSHVPGHASKLYFAFL 90


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 477 AASSFLPKFKFCTSELNTSLDTTAN*SFNSLPLAMYTLLASLRSTPLIDLT 325
           A  +FL  F FC + +N SLD        +    +YTL+  L   P + +T
Sbjct: 289 ARLNFL-SFSFCVNPMNQSLDCNTTPHRRNASSIIYTLMYYLIIAPTLLIT 338


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +2

Query: 281 NDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNL 451
           ND + +A  +DL QK+         L N ++    ++  D+F+   R   +  + NL
Sbjct: 546 NDYIAQAGLSDLLQKIADTTDDKQALKNYLHSWKWDQQIDKFSTFIRKTLSETIDNL 602


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +2

Query: 326 VRSIKGVDLKLANKVYIANGNEL----NDQFAVVSRDVFNSEVQNLNFGKNEEAANIINT 493
           +R+IK   LKL +  YI+   +L    N     +   V    +QN+   ++ E  N+I T
Sbjct: 749 LRTIKKEILKLVD-AYISRAEDLELVGNTLIPALFEAVLLDYLQNVPDARDAEVLNLITT 807

Query: 494 WVSQLN 511
            V+QL+
Sbjct: 808 IVNQLS 813


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 139 TCGELIISILEYSLWVDVTGQCQGREGKYGY 47
           TCG L+I I    LWV++T +    +G  G+
Sbjct: 22  TCGLLLIGIACNVLWVNMTARNILPKGNLGF 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,513
Number of Sequences: 5004
Number of extensions: 41148
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)