Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K15
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0834 - 11630288-11630500,11630531-11630623,11630844-116310...    37   0.011
01_01_1152 + 9170628-9171899                                           30   1.2  
10_08_1019 - 22299800-22299946,22300040-22300109,22300930-223010...    29   2.8  
02_02_0724 + 13349419-13349641,13349880-13349974,13350366-133506...    28   4.9  
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032...    28   6.5  
02_05_1302 + 35567585-35567848,35568303-35568368,35568475-355685...    28   6.5  

>03_02_0834 -
           11630288-11630500,11630531-11630623,11630844-11631050,
           11631301-11633089,11633817-11634145
          Length = 876

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
 Frame = +2

Query: 242 ESHDELLKAIDFPNDNVTKAVFTDLNQKVRSI--KGVDLKLANKVYIANGNELNDQFAVV 415
           + HD LLK+    NDN+TK    + NQ +  +  KG D K  +KV        N+Q   +
Sbjct: 467 KEHDTLLKSSVELNDNLTKTA-EERNQILECLKEKGGDNKALHKVIARLQRISNEQEKTI 525

Query: 416 S--RDVFNSEVQNLNFGKNEEAANI 484
           +  R  FN+E++N + G +E  + +
Sbjct: 526 TGLRQGFNAELENKSLGTSESISRM 550


>01_01_1152 + 9170628-9171899
          Length = 423

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
 Frame = +2

Query: 173 KSVILSAFSVMIPLAQLAIASTGESHDELLKAIDFPN-DNVTKAVFTDLNQKVRSIKGVD 349
           ++ I+S  S    LA +A  + GE+  ELL  +  P+   + ++  T L  ++R +   +
Sbjct: 59  RNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLP--N 116

Query: 350 LKLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNFG-KNEEAANIINTWVS 502
              A  V++  G  L  +FA  +   + +  +  +F  + E+A   +N +VS
Sbjct: 117 TSFACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVS 168


>10_08_1019 -
           22299800-22299946,22300040-22300109,22300930-22301066,
           22301142-22301195,22301638-22301694,22301814-22301846,
           22301942-22302067,22302162-22302815,22303042-22303166,
           22303770-22303935
          Length = 522

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +2

Query: 263 KAIDFPNDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGN-ELNDQFAVVSRDVFNSE 439
           ++ID P D   +   +  N   ++I+  +     K+Y+  G      +  V    +F++ 
Sbjct: 417 ESIDLPRDIARRITMSSGNNLRQAIRSFEATWKAKLYVIRGKIRKLIEHNVSPYFIFSNL 476

Query: 440 VQNLNFGKNEEAANIINTWVSQLN 511
           V  L   ++EE  N I+   S+LN
Sbjct: 477 VAELKRDRDEEFQNSIDQLASELN 500


>02_02_0724 +
           13349419-13349641,13349880-13349974,13350366-13350653,
           13352838-13352963,13353045-13353204,13354142-13354190,
           13354502-13354772,13356071-13356196,13357076-13357231,
           13357815-13358058,13358181-13358627,13359348-13359478
          Length = 771

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +2

Query: 314 LNQKVRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNFGKNEEAANIINT 493
           +NQ   +I  +   +A+     N    N    ++SR   +  VQN  FG+ EE+++ ++ 
Sbjct: 449 INQLKEAIPAMQQSIADLSEEVNSVSSNPMDKIISR--LSPSVQNSGFGRAEESSSELSE 506

Query: 494 WVSQLN 511
             S+L+
Sbjct: 507 MTSKLS 512


>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
            18203336-18203551,18204257-18204361,18204761-18204919
          Length = 1401

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 489  LIMLAASSF--LPKFKFCTSELNTSLDTTAN*SFNSLPLAMYTLLA 358
            L++L   SF  LP    C S L  SL+ T+N S  SLP  M  L A
Sbjct: 1121 LVILGCPSFSSLPASIRCLSNLK-SLELTSNNSLTSLPEGMQNLTA 1165


>02_05_1302 +
           35567585-35567848,35568303-35568368,35568475-35568573,
           35569028-35569061,35569147-35569246,35569738-35569813,
           35569974-35570315,35570426-35570569,35570840-35571073,
           35571149-35571212,35571297-35571340,35571431-35571601
          Length = 545

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 120 FPFLSTLCGSMSLANVKAA-RANMVIIIFMLSVTFVF 13
           FPFL T     + +N+KAA    +V ++F +SVT  F
Sbjct: 190 FPFLMTRACCEACSNLKAAFLVAVVFLLFCMSVTLYF 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,808,330
Number of Sequences: 37544
Number of extensions: 222286
Number of successful extensions: 554
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)