Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K15
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6223| Best HMM Match : Ras (HMM E-Value=0)                          36   0.033
SB_19092| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_12423| Best HMM Match : Glypican (HMM E-Value=1.00053e-42)          31   0.93 
SB_39234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_34109| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)                 28   6.5  
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)                28   6.5  
SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2)            28   6.5  
SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64)                   28   6.5  
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  27   8.6  
SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  27   8.6  

>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1665

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +2

Query: 83  SDIDPQRVLKNGNDQFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGES 247
           SD++ +R +     Q  AR   E++K  PD+S  L A   ++ L  LA+AST ++
Sbjct: 126 SDLEYERTVSTAEGQELARQLREIIKLVPDRSPSLQAQEALLGLG-LALASTQQN 179


>SB_19092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 270 IALRSSSCDS-PVEAIASWANGIMTENADNI 181
           + LR ++CD  P++A+A W NG     AD +
Sbjct: 159 VVLRKNACDDVPLDALADWCNGKWPPRADGL 189


>SB_12423| Best HMM Match : Glypican (HMM E-Value=1.00053e-42)
          Length = 737

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 21/78 (26%), Positives = 39/78 (50%)
 Frame = +2

Query: 335 IKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNFGKNEEAANIINTWVSQLNC 514
           IK  +++L NK+YI        + A V  D+F  E+     GKN + + ++N + + L  
Sbjct: 278 IKNSEIEL-NKLYIKTYGVFYQKNAQVFVDLFQ-ELNKYYDGKNMDLSQVMNNFFANLMK 335

Query: 515 YEFAIEYXKFHYLQVFLE 568
             F +   K+ + + FL+
Sbjct: 336 QMFQLMNTKYTFSKPFLD 353


>SB_39234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 527 IEYXKFHYLQVFLEV 571
           I+Y  FHYL+VFLE+
Sbjct: 50  IQYMSFHYLEVFLEL 64


>SB_34109| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
          Length = 503

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 107 LKNGNDQFTARMFNEVVKKNPDKSVIL-SAFSVMIPLAQLAIASTGESHDELLKAIDFPN 283
           L+ GN +     +N+ +K NPD   IL    +V   +  +  A   E +   LKA  FPN
Sbjct: 51  LEQGNYKQALACYNQALKHNPDDPTILWERAAVCYQMGDVKKAL--EYYQVALKA--FPN 106

Query: 284 DNVTK 298
           D++ K
Sbjct: 107 DDLEK 111


>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
          Length = 160

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 206 IPLAQLAIASTGESHDELLKAIDFPNDNVTKAVFTDLNQKV 328
           + L+ L  A+TG + DE+L+ ID      TK V T ++ K+
Sbjct: 78  LKLSILYPATTGRNFDEILRVIDSLQLTATKKVATPVDWKL 118


>SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2)
          Length = 953

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 315 KSVNTALVTLSLGKSIALRSSSCDSPVEAIASWANGIMTENADNI 181
           K   +ALVT +  K++  +S     P  A AS +N   T+N D +
Sbjct: 633 KKPQSALVTSTKTKAVEPQSLMASKPSSASASPSNTYRTQNTDQV 677


>SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64)
          Length = 325

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/71 (22%), Positives = 34/71 (47%)
 Frame = +2

Query: 347 DLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNFGKNEEAANIINTWVSQLNCYEFA 526
           D +L   + + +  +L  Q  + S+ +  + + +   GKN+E A + N   +  + Y   
Sbjct: 57  DAELQKLMQLVSSKDLELQRLMGSKQLLENRLDDNIRGKNKELAELANKLKALSHEYSEK 116

Query: 527 IEYXKFHYLQV 559
           ++  + HY QV
Sbjct: 117 VDSLEEHYRQV 127


>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1883

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = -1

Query: 303 TALVTLSLGKSIALRSSSCDSPVEAIASWANGIMTENADNIXXXXX--XXXXXXLNIRAV 130
           +ALVT +  K++  +S     P  A AS +N   T+N D +               I+A+
Sbjct: 382 SALVTSTKTKAVEPQSVMASKPSSASASPSNTYRTQNTDQVKSGSSIHAPTSNKDRIKAI 441

Query: 129 N*SFPFLSTLCGSMSLANVKAARA 58
           + S  F  T     S   VK A A
Sbjct: 442 SSSATFPKTTERFASKPEVKDACA 465


>SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/47 (23%), Positives = 26/47 (55%)
 Frame = +2

Query: 440 VQNLNFGKNEEAANIINTWVSQLNCYEFAIEYXKFHYLQVFLEVYFL 580
           V++   G+ +EA  +I+   S++   +F +    F Y+ VF+ ++ +
Sbjct: 540 VEDTRAGEAKEADRMISEETSEIGSVKFKVFLTYFRYIGVFIVIFVM 586


>SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1026

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = -1

Query: 303 TALVTLSLGKSIALRSSSCDSPVEAIASWANGIMTENADNIXXXXX--XXXXXXLNIRAV 130
           +ALVT +  K++  +S     P  A AS +N   T+N D +               I+A+
Sbjct: 379 SALVTSTKTKAVEPQSVMASKPSSASASPSNTYRTQNTDQVKSGSSIHAPTSNKDRIKAI 438

Query: 129 N*SFPFLSTLCGSMSLANVKAARA 58
           + S  F  T     S   VK A A
Sbjct: 439 SSSATFPKTTERFASKPEVKDACA 462


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,490,385
Number of Sequences: 59808
Number of extensions: 270988
Number of successful extensions: 865
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)