Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K15
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33050.2 68414.m04070 expressed protein                             33   0.14 
At1g33050.1 68414.m04069 expressed protein                             33   0.14 
At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containi...    32   0.33 
At3g27670.1 68416.m03455 expressed protein                             29   3.1  
At5g15980.1 68418.m01868 pentatricopeptide (PPR) repeat-containi...    28   4.1  
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta...    28   5.4  
At3g59450.1 68416.m06631 calcium-binding EF hand family protein ...    28   5.4  
At2g34250.1 68415.m04190 protein transport protein sec61, putati...    28   5.4  
At1g29310.1 68414.m03583 protein transport protein sec61, putati...    28   5.4  
At3g24900.1 68416.m03122 disease resistance family protein / LRR...    27   9.4  
At2g43340.1 68415.m05389 expressed protein                             27   9.4  

>At1g33050.2 68414.m04070 expressed protein
          Length = 607

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 356 LANKVYIANGNELNDQFAVVSRDVFNSEVQNLN-FGKNEEAANIINTWVSQLNCYEFAI 529
           L+  + +A+G+E +D       D+ NS VQNLN + +N    +  N  V+Q N Y+  +
Sbjct: 529 LSELLTLAHGSESSDSPNAEELDLINSTVQNLNLYIQNNSQEHAGNQSVAQYNSYDLKL 587


>At1g33050.1 68414.m04069 expressed protein
          Length = 693

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 356 LANKVYIANGNELNDQFAVVSRDVFNSEVQNLN-FGKNEEAANIINTWVSQLNCYEFAI 529
           L+  + +A+G+E +D       D+ NS VQNLN + +N    +  N  V+Q N Y+  +
Sbjct: 529 LSELLTLAHGSESSDSPNAEELDLINSTVQNLNLYIQNNSQEHAGNQSVAQYNSYDLKL 587


>At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 939

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +2

Query: 125 QFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGE-SHDELLKAIDFPNDNVTKA 301
           Q    +F E++  +  K   ++  SV   ++ L     G+ +HD L  +   PNDN+T A
Sbjct: 673 QLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRAHDYLNFSTIPPNDNLTAA 732

Query: 302 VFTDLNQKVRSIK 340
           +  D+  K  SI+
Sbjct: 733 II-DMYAKCGSIE 744


>At3g27670.1 68416.m03455 expressed protein
          Length = 1841

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = -1

Query: 489 LIMLAASSFLPKFKFCTSELNTSLDTTAN*SFNSLPLAMYTLLASLRSTPL-IDLTF*FK 313
           L +L    FL K+K  T   N S+   A  S  SL L   T L S  S  + +  +    
Sbjct: 324 LCILKFLLFLLKWK--TESENLSVKDAAGSSVESLLLFPITALMSSPSKSIKVAASKVLS 381

Query: 312 SVNTALVTLSLGKSIALRSSSCDSPVEAIAS 220
            V   LVT+S    I + +S  DSP+  + S
Sbjct: 382 IVENFLVTVSNAPKIEVHTSKGDSPLSRVGS 412


>At5g15980.1 68418.m01868 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 668

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
 Frame = +2

Query: 116 GNDQFTARMFNEVVK-KNPDKSVILSAF-SVMIPLAQLAIASTGESHDELLKAIDFPNDN 289
           G ++F  R  N VV+ ++    V +  +  V     Q  +        E+  A    ++N
Sbjct: 298 GKEKFLDRFQNIVVEMRSAGYEVEIETYVRVSTRFCQTKLIKEAVDLFEIAMAGSSSSNN 357

Query: 290 VTKAVFTDLNQKVRSIKGVDLKL---ANKVYIANGNELND 400
            T   F  L +K+ + K +D+ L   A KVY  NGN L D
Sbjct: 358 PTPHCFCLLLKKIVTAKILDMDLFSRAVKVYTKNGNALTD 397


>At4g28470.1 68417.m04073 26S proteasome regulatory subunit,
           putative contains Pfam domain PF01851:
           Proteasome/cyclosome repeat
          Length = 1103

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 293 TKAVFTDLNQKVRSIKGVDLKLANKVYIANGNEL--NDQFAVVSRDVFNSEVQNL 451
           T  V    N+K+R  K  D+ L +  Y   GN L  +DQF++  + +   +VQ+L
Sbjct: 637 TAEVSKTFNEKIR--KYCDMTLLSCAYAGTGNVLKVSDQFSLTLQTIQTIQVQDL 689


>At3g59450.1 68416.m06631 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 148

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = +2

Query: 329 RSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNFGKN----EEAANIINTW 496
           ++I  VD ++AN   +  G + N + A  +RD  N +++  +F       +   N+IN  
Sbjct: 21  QAIALVDEEIANLRKLERGYQTNIRNAENARDQTNVQIERDSFNDTIRLLQAECNLINLE 80

Query: 497 VSQLNCYEFAIEYXK 541
           +  LN  +FAI   K
Sbjct: 81  IPTLNEEKFAITRLK 95


>At2g34250.1 68415.m04190 protein transport protein sec61, putative
           similar to PfSec61 [Plasmodium falciparum] GI:3057044;
           contains Pfam profile PF00344: eubacterial secY protein
          Length = 475

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 439 FRIKHISGHNSKLII*FITVSNVYFISQFEINSFNRSYFL 320
           + IK     N  +I+    VSN+YFISQ     F+ ++F+
Sbjct: 282 YPIKLFYTSNMPIILQSALVSNLYFISQLLYRKFSGNFFV 321


>At1g29310.1 68414.m03583 protein transport protein sec61, putative
           similar to PfSec61 [Plasmodium falciparum] GI:3057044;
           contains Pfam profile PF00344: eubacterial secY protein
          Length = 475

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 439 FRIKHISGHNSKLII*FITVSNVYFISQFEINSFNRSYFL 320
           + IK     N  +I+    VSN+YFISQ     F+ ++F+
Sbjct: 282 YPIKLFYTSNMPIILQSALVSNLYFISQLLYRKFSGNFFV 321


>At3g24900.1 68416.m03122 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 884

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +2

Query: 383 GNELNDQFAVVSRDVFNSEVQNLNFGKNEEAANIINTWVSQLNCYEFAIEYXKFHY---L 553
           GN L+    V +  + +S ++NLN G+N     II      +N  E  + +    Y   L
Sbjct: 302 GNNLSGSIEVPNSSL-SSRLENLNLGENHFEGKIIEPISKLINLKELHLSFLNTSYPINL 360

Query: 554 QVFLEVYFL 580
           ++F  + +L
Sbjct: 361 KLFSSLKYL 369


>At2g43340.1 68415.m05389 expressed protein
          Length = 189

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 261 RSSSCDSPVEAIASWANGIMTENADNI 181
           +SS  DSPV  IASW      +N D++
Sbjct: 144 KSSVLDSPVSPIASWKISSPGDNPDDV 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,901,037
Number of Sequences: 28952
Number of extensions: 197808
Number of successful extensions: 537
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)