Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K13
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281     29   3.7  
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316...    27   8.5  

>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
          Length = 518

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 118 NRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLS 249
           NR+ R L++  +++    E I +    CMKK+   ++N L  +S
Sbjct: 39  NRLLRSLVNIHEQETYSREIITEAIESCMKKQADNLVNTLDVIS 82


>10_08_0355 -
           17131178-17131268,17131376-17131429,17131521-17131663,
           17131812-17132096,17132168-17132301,17132383-17132556,
           17132639-17132707,17132814-17132878,17133441-17133589,
           17133747-17133989,17134119-17134255,17134340-17134561,
           17134661-17134827,17136680-17136819
          Length = 690

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 21  NYNLHSV---KNYEAIRFLDIFEKTFVQSLQK 107
           NYN+  V   KN+ A+R  DIF KT  +  +K
Sbjct: 521 NYNIAIVSLKKNFNAVRLEDIFSKTVQEPSEK 552


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,872,856
Number of Sequences: 37544
Number of extensions: 295799
Number of successful extensions: 747
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)