Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K13
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica...    30   1.0  
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    29   1.8  
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain...    29   1.8  
At4g11310.1 68417.m01827 cysteine proteinase, putative contains ...    29   1.8  
At2g45870.1 68415.m05705 expressed protein contains Pfam profile...    29   1.8  
At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH) domain...    29   2.3  
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro...    28   4.1  
At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identic...    28   5.4  
At5g15510.1 68418.m01816 expressed protein                             27   7.1  
At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM ...    27   7.1  
At1g17460.1 68414.m02141 myb family transcription factor contain...    27   9.4  

>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger (C3HC4 type RING
           finger) family protein low similarity to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 1648

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 127 ARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQ 270
           AR++I T+KR +          P+    +  +++N L+KL  A C  Q
Sbjct: 719 AREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQ 766


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 51  EAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 170
           EA   LD+  KTFV    + + + +  K  F+D + + FV
Sbjct: 217 EAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256


>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to  Chain B, Crystal Structure Of N-Terminal Domain Of
           Drosophila Ap180 (GP:13399617) [Drosophila
           melanogaster]; supporting cDNA
           gi|20465326|gb|AY096427.1|
          Length = 601

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
 Frame = +3

Query: 180 WQENADLYEEEVTKDYQ-RSYEIVARHV---LGAAPKPFD---KHTFMPSALDFYQTALR 338
           W     L+ EE  + Y+   Y+I A  +    GA+ K  D     T+    L   +   +
Sbjct: 139 WIRTYALFLEERLECYRVLKYDIEAERLPKGSGASSKNVDFNASQTYRTRMLSDEELLEQ 198

Query: 339 DPAFYQLYNRIVGYI---NAFKHYLKPYPQE---KLHF-VGVKINDVVVEKLVTFFDYSQ 497
            PA  QL  R++G     +A+ +YL  Y      K  F +   IND ++  +  FF+ S+
Sbjct: 199 LPALQQLLYRLIGCQPEGSAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSR 258

Query: 498 FDATNSVFLTKK 533
            DA  ++ + K+
Sbjct: 259 HDAVKALNIYKR 270


>At4g11310.1 68417.m01827 cysteine proteinase, putative contains
           similarity to cysteine proteinase RD21A (thiol protease)
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 364

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
 Frame = +3

Query: 18  DNYNLHSVKNYEAIRFLDIFEKTFVQSLQK-GKFESYGKKIDFHDEKAINFVGNYWQENA 194
           DN  LHSV + EA     IFE   V+  +  G      +++   ++  + F+ N   EN 
Sbjct: 33  DNNRLHSVFDAEASL---IFESWMVKHGKVYGSVAEKERRLTIFEDN-LRFINNRNAENL 88

Query: 195 DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 341
             Y   +T     S         GA P+P   H FM S+ D Y+T+  D
Sbjct: 89  S-YRLGLTGFADLSLHEYKEVCHGADPRPPRNHVFMTSS-DRYKTSADD 135


>At2g45870.1 68415.m05705 expressed protein contains Pfam profile
           PF05249: Uncharacterised protein family (UPF0187)
          Length = 410

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 24/77 (31%), Positives = 40/77 (51%)
 Frame = +1

Query: 106 KANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHS 285
           K++ + ++ KLIS +K     S+ I +R  +  K+ L    N +   S    S++HL H 
Sbjct: 49  KSDDSPLSEKLISLLKAVPNWSDGIKERR-MQQKRSLYTHENWVRHRS----SLRHLRHV 103

Query: 286 TSTPSCPVRLTFTKPHF 336
           +S+PS  V L+   P F
Sbjct: 104 SSSPSSRVILSLIPPVF 120


>At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related low similarity to clathrin assembly
           protein AP180 [Xenopus laevis] GI:6492344; contains Pfam
           profile PF01417: ENTH domain
          Length = 591

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
 Frame = +3

Query: 180 WQENADLYEEEVTKDYQ-RSYEIVARHVLGAAPKPFDKH-TFMPSALDFYQTALRDPAFY 353
           W     L+ EE  + Y+   Y+I A  +  A+      H T M S  D  +     PA  
Sbjct: 139 WVRTYALFLEERLECYRVLKYDIEAERLPKASGAASKTHRTRMLSGEDLLEQL---PALQ 195

Query: 354 QLYNRIVGYIN---AFKHYLKPYPQE---KLHF-VGVKINDVVVEKLVTFFDYSQFDATN 512
           QL  R++G      A+ +YL  Y      K  F +   IND ++  +  FF+ S+ DA  
Sbjct: 196 QLLYRLIGCQPEGAAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSRHDAVK 255

Query: 513 SVFLTKK 533
           ++ + K+
Sbjct: 256 ALNIYKR 262


>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
           P450 76A2, eggplant, PIR:S38534
          Length = 516

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +3

Query: 129 KKIDFHDEKAINFVGNYWQENADLYE----EEVTKDY 227
           +K  FH EKA    G + +E  ++ E    +E TKDY
Sbjct: 242 RKTQFHVEKAFEIAGEFIRERTEVREREKSDEKTKDY 278


>At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identical
           to SP|Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis
           thaliana}, RAV1 GI:3868857 from [Arabidopsis thaliana]
          Length = 344

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +3

Query: 306 SALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFF 485
           SA   ++ A+      +L   ++   +A KH+  P P   +   GV +N   V   V  F
Sbjct: 183 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHF--PLPSSNVSVKGVLLNFEDVNGKVWRF 240

Query: 486 DYSQFDATNSVFLTK 530
            YS ++++ S  LTK
Sbjct: 241 RYSYWNSSQSYVLTK 255


>At5g15510.1 68418.m01816 expressed protein
          Length = 497

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = +3

Query: 132 KIDFHDEKAINFVGNYWQENA---DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFM 302
           + D+   + ++F+  Y  E      L EEE  +  ++  E+V +    A P P+    F+
Sbjct: 397 EFDYQVAEKMSFIEQYKMERERQQKLAEEEEIRRLRK--ELVPK----AQPMPYFDRPFI 450

Query: 303 PSALDFYQTALRDPAFY 353
           P     + TA RDP F+
Sbjct: 451 PRRSSKHPTAPRDPKFH 467


>At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM
           TIGR01640 : F-box protein interaction domain;
          Length = 364

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 584 ESWLTNLEVVWVTSLNLFFGQEYTVSG--IKLAIVKECD*FLNDNI-IDF 444
           ESW  NL ++    ++ +F Q Y V G  ++ + V E     N+ + IDF
Sbjct: 39  ESWFVNLNLLRTNRISGYFIQHYIVKGHELRTSFVHERSDLQNNGVSIDF 88


>At1g17460.1 68414.m02141 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 604

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 61  GSWTFLKRLSYSPY 102
           G WT +K+LS+SPY
Sbjct: 517 GKWTEIKKLSFSPY 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,451,142
Number of Sequences: 28952
Number of extensions: 253406
Number of successful extensions: 714
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)