Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K12
         (146 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   1.4  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    24   2.4  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    23   5.5  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    23   5.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    23   7.2  
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom...    23   7.2  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    23   7.2  

>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 134 VTF*VQNDECVECSRTY 84
           V F V N +C +C+RTY
Sbjct: 138 VEFYVNNTQCPDCARTY 154


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 64  LTMDLYIYVLEHSTHSSFWT 123
           L+ D ++Y ++HST ++ W+
Sbjct: 252 LSEDYHVYFVDHSTKTTTWS 271


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 37  NHSIHEQTVLTMDLYIYVLEHSTH 108
           N+S+ E   +TM+ YI + E   H
Sbjct: 134 NYSLEEIIAMTMEHYISLAEEMAH 157


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 70  WLTRSVHVYCG 38
           W T+  HVYCG
Sbjct: 208 WATKCGHVYCG 218


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +3

Query: 12  LKTTTHSIKPQYT*TDRVNHGPLHICPRALYTFIVLDLEGYAIPP 146
           LKT +H    +   T ++NH  L +    +  +  L+     +PP
Sbjct: 413 LKTQSHVPSAKVPPTSKLNHAQLAMLKSQIVAYNCLNSPNGQVPP 457


>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 132

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 73 PWLTRSVHVYCGFIECVVVFSGI 5
          P L +S HV CG +  V VF G+
Sbjct: 18 PVLAKSAHVACGAL--VAVFLGL 38


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
 Frame = +3

Query: 66  NHGPLHI------CPRALYTFIVLDLEGY 134
           NHG ++I       P A+Y F+ L  +GY
Sbjct: 283 NHGEINIELHTDYAPHAVYNFVQLAKQGY 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 637,729
Number of Sequences: 5004
Number of extensions: 8947
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 29
effective length of database: 2,217,362
effective search space used: 42129878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)