Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K12
         (146 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16609| Best HMM Match : PHD (HMM E-Value=0.003)                     28   1.4  
SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_19080| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-08)                 26   5.6  
SB_5723| Best HMM Match : SRCR (HMM E-Value=2.8e-34)                   26   5.6  
SB_54917| Best HMM Match : Lectin_C (HMM E-Value=0.092)                25   9.8  

>SB_16609| Best HMM Match : PHD (HMM E-Value=0.003)
          Length = 78

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 107 CVECSRTYM*RSMVNTVCSCILWFYRMCRS 18
           C+EC +       V     C LW +RMC S
Sbjct: 4   CIECGKEVRPHQQVLQCDDCGLWQHRMCNS 33


>SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 110 ECVECSRTYM*RSMVNTVCSCILWFYRMCRSL*RNT 3
           +C  C      R   +T C+C+  FYR      +NT
Sbjct: 228 DCTRCPNNSDARETGSTSCACVSGFYRKSGESIKNT 263


>SB_19080| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-08)
          Length = 281

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 85  ICKGPWLTRSVHVYCGFIECVVVFS 11
           +  G W TRS+H    F+ CV+  S
Sbjct: 53  VVAGIWKTRSLHSPANFLICVLAIS 77


>SB_5723| Best HMM Match : SRCR (HMM E-Value=2.8e-34)
          Length = 315

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 91  GHICKGPWLTRSVHVYC 41
           GHIC   W  +  HV C
Sbjct: 219 GHICDDDWTLQDAHVIC 235


>SB_54917| Best HMM Match : Lectin_C (HMM E-Value=0.092)
          Length = 565

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 91  GHICKGPWLTRSVHVYCGFIECVVVF 14
           G    GPW T ++  Y  F++C V +
Sbjct: 419 GPFWNGPWKTGTILNYMDFLKCGVTY 444


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,874,308
Number of Sequences: 59808
Number of extensions: 68803
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 16,821,457
effective HSP length: 28
effective length of database: 15,146,833
effective search space used: 302936660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)