Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K12
         (146 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g33530.1 68416.m04290 transducin family protein / WD-40 repea...    27   1.3  
At3g23320.1 68416.m02941 hypothetical protein                          27   1.7  
At4g16690.1 68417.m02520 esterase/lipase/thioesterase family pro...    26   3.0  
At1g55850.1 68414.m06405 cellulose synthase family protein simil...    26   3.9  

>At3g33530.1 68416.m04290 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein 11
           (SP:Q9BZH6) {Homo sapiens}; contains Pfam PF00400: WD
           domain, G-beta repeat (4 copies, 3
           weak)|2763187|gb|T46504.1|T46504
          Length = 1345

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 71  WTFTYMSSSTLHIHRSGLRRLRYS 142
           W  T   SS  + HR G+RR+++S
Sbjct: 778 WDVTTGQSSAFNSHRDGIRRIKFS 801


>At3g23320.1 68416.m02941 hypothetical protein 
          Length = 191

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 57  DRVNHGPLHICPRALYTFIVLDLE 128
           + +NH   H CPR L +F+  D E
Sbjct: 165 NHINHTLYHFCPRFLMSFVNKDAE 188


>At4g16690.1 68417.m02520 esterase/lipase/thioesterase family
           protein similar to ethylene-induced esterase [Citrus
           sinensis] GI:14279437, polyneuridine aldehyde esterase
           [Rauvolfia serpentina] GI:6651393, SP|Q40708 PIR7A
           protein {Oryza sativa}; contains Interpro entry
           IPR000379
          Length = 262

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 82  IYVLEHSTHSSFWT*KVTLF 141
           +YVLE S HS+F++   TLF
Sbjct: 231 LYVLEDSDHSAFFSVPTTLF 250


>At1g55850.1 68414.m06405 cellulose synthase family protein
          similar to cellulose synthase catalytic subunit
          [gi:13925881] from Nicotiana alata, cellulose
          synthase-5 [gi:9622882] from Zea mays
          Length = 729

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 59 VCSCILWFYRM 27
          VC C++WFYR+
Sbjct: 41 VCICLIWFYRI 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,271,496
Number of Sequences: 28952
Number of extensions: 45248
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 12,070,560
effective HSP length: 29
effective length of database: 11,230,952
effective search space used: 213388088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)